PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024984492.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 466aa    MW: 52561.7 Da    PI: 6.6469
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024984492.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS451.36.2e-138494611374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA++v++g+ e+a+  L+++++las dgd+mqR+aayfteALa+r+++ +++lyka+++++ +  ++s+e+ + +lf++++P+l++s+
  XP_024984492.1  49 LIHLLVACANHVAAGSIENANIGLEQINHLASADGDTMQRIAAYFTEALANRMLKGWPGLYKAINSTRIT--SVSDEMLVKRLFFDLCPFLRLSY 141
                     689*************************************************************999887..599******************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +++NqaIle++ege++vHiiD+  s+++QW++Llq+L sRpegpp+lRiTg+++    +ke le+++ rL++ Ae+l++pf+fn+ +++rl++l+
  XP_024984492.1 142 IITNQAILESMEGEKMVHIIDLCSSEPAQWINLLQSLRSRPEGPPHLRITGIHQ----QKEVLEQMALRLNEEAEKLDIPFQFNP-IVSRLDNLD 231
                     ******************************************************....9**************************.79******* PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll..................................................desvsleserdevLklvksls 235
                     ++ Lr k+gEala+++vlqlh+ll                                                  ++s+++ +    +L+++++ls
  XP_024984492.1 232 IKCLRYKSGEALAISSVLQLHTLLafddemakkspaskrvlhmnsqtlgdflkkdvtsafspspdstssspfslANSAKMMN----FLNALWTLS 322
                     *******************************************************************966655555555555....********* PP

            GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330
                     Pk++vv+eqe++hn+ s+++r++eal +y+alfd+le+++pr+s er+kvE++l+g+ei+n++aceg err rhe+lekW  rle aGF+ vpls
  XP_024984492.1 323 PKLMVVTEQESNHNKFSLMDRVIEALIFYAALFDCLESTVPRASLERQKVEKMLFGEEIKNIIACEGIERRVRHEKLEKWVPRLELAGFGRVPLS 417
                     *********************************************************************************************** PP

            GRAS 331 ekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++ +  a +ll++++ dgy+++ee+g+lv++W+++pL+s+SaW+
  XP_024984492.1 418 YNGMLLATRLLQNYGYDGYKMKEENGCLVICWHNQPLFSISAWK 461
                     *******************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    
MSGMAQEDGS SSISSSPLHL FSLMSLSPGI GSPYPWLREM ESEERGLYLI HLLVACANHV  60
AAGSIENANI GLEQINHLAS ADGDTMQRIA AYFTEALANR MLKGWPGLYK AINSTRITSV  120
SDEMLVKRLF FDLCPFLRLS YIITNQAILE SMEGEKMVHI IDLCSSEPAQ WINLLQSLRS  180
RPEGPPHLRI TGIHQQKEVL EQMALRLNEE AEKLDIPFQF NPIVSRLDNL DIKCLRYKSG  240
EALAISSVLQ LHTLLAFDDE MAKKSPASKR VLHMNSQTLG DFLKKDVTSA FSPSPDSTSS  300
SPFSLANSAK MMNFLNALWT LSPKLMVVTE QESNHNKFSL MDRVIEALIF YAALFDCLES  360
TVPRASLERQ KVEKMLFGEE IKNIIACEGI ERRVRHEKLE KWVPRLELAG FGRVPLSYNG  420
MLLATRLLQN YGYDGYKMKE ENGCLVICWH NQPLFSISAW KFTRYS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0GRAS family protein