PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024984472.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | LBD | ||||||||
Protein Properties | Length: 246aa MW: 26774.8 Da PI: 6.2943 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.2 | 3.3e-39 | 42 | 143 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++C++apyf ++q +++fa+vhk+FGasnv+kll ++p ++r++a+ ++ yeA+ar++dPvyG+v+++l+lqqq++ l++el XP_024984472.1 42 PCGACKFLRRKCVNGCIFAPYFGSDQgAARFAAVHKVFGASNVSKLLMHIPVNRRQHAVVTISYEAQARLSDPVYGCVSTVLALQQQVAALQTEL 136 7***********************9989******************************************************************* PP DUF260 95 allkeel 101 +++++l XP_024984472.1 137 TMVQNQL 143 ***9985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence |
MADTHADGMS SDTRRKGPGV GKRTVASFEA ATSETGSIPN PPCGACKFLR RKCVNGCIFA 60 PYFGSDQGAA RFAAVHKVFG ASNVSKLLMH IPVNRRQHAV VTISYEAQAR LSDPVYGCVS 120 TVLALQQQVA ALQTELTMVQ NQLINNRLLV ANSLQSSQQQ LEPVHHLSLL RPAYSNASSA 180 SNNNILNMNS FDSSLNNLAD DHHRDTLSQQ SFNPLQLCQP CNDDEDDDEE ESGDPLAFAN 240 QMLQSR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 3e-56 | LBD family protein |