PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024984431.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HSF

Protein Properties

Length: 472aa MW: 53029.7 Da PI: 5.3793

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024984431.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	110.2	1.5e-34	19	109	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl k+y++++d+ ++e++sws+n nsfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF++++F k++k+ll++ XP_024984431.1 19 FLLKTYDMVDDSLTDEIVSWSSNRNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEEFVKDQKHLLKN 104 9**************************************************************999.........************** PP XXXXX CS HSF_DNA-bind 97 ikrkk 101 i+r+k XP_024984431.1 105 IHRRK 109 *98 PP

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence
MEGNQSASAG GGGGGPAPFL LKTYDMVDDS LTDEIVSWSS NRNSFVVWNP PEFARLLLPT 60 YFKHNNFSSF IRQLNTYGFR KIDPERWEFA NEEFVKDQKH LLKNIHRRKP IHSHSIPQSS 120 TVDPERAAFE EEIDKLTREK TSLEKSVSRF KQQQPATKLQ LEDLTQRVNT MEQRQDTLLA 180 FMKKATQNPE FVEHLARKLE SMDFSAENKK RRLPRSRVFP DDGLVDNHSP QSPSRPDFGN 240 VFHHDFSNKL RLELSPAVSD INFISNSTQS SNEDGGSPQI RLFEGCTRTP PGGLPFAPET 300 QELSDTCTSF GFNMESSFMP KTGPCNNPSV RCLQPPIVDA NEESDGHLSC QLNLTLASCV 360 SQINPCQETD TIPPSFEDIG KPSEWTANAR VPEKNRSSLV GENEPTKPAP PATSQARVND 420 VFWEQFLTER PGSSDVEDAS SNLKSTPSYE QEDRRSGHGS FGNSRNMQNL TL

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence

MEGNQSASAG GGGGGPAPFL LKTYDMVDDS LTDEIVSWSS NRNSFVVWNP PEFARLLLPT  60
YFKHNNFSSF IRQLNTYGFR KIDPERWEFA NEEFVKDQKH LLKNIHRRKP IHSHSIPQSS  120
TVDPERAAFE EEIDKLTREK TSLEKSVSRF KQQQPATKLQ LEDLTQRVNT MEQRQDTLLA  180
FMKKATQNPE FVEHLARKLE SMDFSAENKK RRLPRSRVFP DDGLVDNHSP QSPSRPDFGN  240
VFHHDFSNKL RLELSPAVSD INFISNSTQS SNEDGGSPQI RLFEGCTRTP PGGLPFAPET  300
QELSDTCTSF GFNMESSFMP KTGPCNNPSV RCLQPPIVDA NEESDGHLSC QLNLTLASCV  360
SQINPCQETD TIPPSFEDIG KPSEWTANAR VPEKNRSSLV GENEPTKPAP PATSQARVND  420
VFWEQFLTER PGSSDVEDAS SNLKSTPSYE QEDRRSGHGS FGNSRNMQNL TL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-151	HSF family protein