PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024984347.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HD-ZIP
Protein Properties Length: 739aa    MW: 81729.5 Da    PI: 5.8498
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024984347.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox603.7e-1960115156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++eLe++F+++++p+ ++r+eL ++l L+  qVk+WFqN+R+++k
  XP_024984347.1  60 KKRYHRHTQHQIQELESFFKECPHPDDKQRKELGRRLTLEPLQVKFWFQNKRTQMK 115
                     688999***********************************************998 PP
2START226.39.2e-712494691206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela +a++elv++a+++ep+Wv  s    e++n+d++lq+f+++ +      ++ea+r+s+vv+m++ +lve+l+d++ qW++ +     +a+tl
  XP_024984347.1 249 ELAVAAMEELVRMAQSGEPLWVPNSdnscEILNEDDYLQTFPRGIGpkqlgMKSEASRESAVVIMNHINLVEILMDVN-QWSNVFSgivsRAMTL 342
                     57899******************9999****************999********************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     ev+s+g      galq+m++e+q++splvp R+++fvRy++q+++g+w++vdvS+d+ ++ +    + R++++pSg+li++++ng+skvtwvehv
  XP_024984347.1 343 EVLSTGvagnynGALQVMTTEYQVPSPLVPtREYYFVRYCKQHTDGTWAVVDVSLDNLRPSS----MSRSRRRPSGCLIQELPNGYSKVTWVEHV 433
                     **********************************************************9965....8**************************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++r +h ++r lv+sgla+ga++wvatl+rqce+
  XP_024984347.1 434 EVDDRAVHDIYRLLVNSGLAFGARRWVATLDRQCER 469
                     **********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    
MFQPNMFESH HHHLLDMSHK TPENELDMLR DDEYESKSGT DIMEAPSGDE QDPNQRPNKK  60
KRYHRHTQHQ IQELESFFKE CPHPDDKQRK ELGRRLTLEP LQVKFWFQNK RTQMKAQHER  120
HENSQLRNEN EKLRMENIRY KEALANATCP NCGGPAAIGE MSFDEQHLRI ENARLREEID  180
RISGIAAKYV GKPMLSYPNL SPNGPPRSLD LPIASFSPQP AMVDDMFGTS NLLRSVSGPS  240
EADKPVIIEL AVAAMEELVR MAQSGEPLWV PNSDNSCEIL NEDDYLQTFP RGIGPKQLGM  300
KSEASRESAV VIMNHINLVE ILMDVNQWSN VFSGIVSRAM TLEVLSTGVA GNYNGALQVM  360
TTEYQVPSPL VPTREYYFVR YCKQHTDGTW AVVDVSLDNL RPSSMSRSRR RPSGCLIQEL  420
PNGYSKVTWV EHVEVDDRAV HDIYRLLVNS GLAFGARRWV ATLDRQCERL ASAMANNIPA  480
GDVGGNTINY SLSLLIITTL EGRKSMLKLA ERMVLSFCSG VGASTTHTWT TLSGSGADDV  540
RVMTRKSVDD PGRPPGIVLS AATSFWIPVP PKRVFDFLRD ENSRSEWDIL SNGGLVQEMA  600
HIANGRDPGN CVSLLRVNSA NSSQGNMLIL QESSNDSTGS YVIYAPVDIA AMNVVLSGGD  660
PDYVALLPSG FAILPDGPGK QQGSTILEVG NGGSLLTVAF QILVDSAPTA KLSLGSVATV  720
NSLIKCTVER IKAAVAPEL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0HD-ZIP family protein