PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024984329.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NF-YB

Protein Properties

Length: 190aa MW: 21503.2 Da PI: 8.4532

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024984329.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	178.6	5.5e-56	21	116	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 +eqdrflPianv+rimkkv+P+n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++tlGfe+yveplk+yl kyr+leg+ XP_024984329.1 21 KEQDRFLPIANVGRIMKKVVPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEEYVEPLKLYLVKYRQLEGD 115 89********************************************************************************************9 PP NF-YB 97 k 97 k XP_024984329.1 116 K 116 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence
MEDVKNGKRS PENPSSKNNN KEQDRFLPIA NVGRIMKKVV PGNGKISKDA KETVQECVSE 60 FISFVTGEAS DKCQREKRKT INGDDIIWAI TTLGFEEYVE PLKLYLVKYR QLEGDKVSNN 120 VPKQQCIERQ QQHSLPTYKN VYSSAAAASI MSQPPFATIF EQTFALPFSS NSIQSQLHRQ 180 QESIDSVGQW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G13570.1	2e-63	NF-YB family protein