PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024984272.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family B3
Protein Properties Length: 471aa    MW: 54608.4 Da    PI: 10.0117
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024984272.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.94.2e-14135223495
                     E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                       +++++ ks+ l++p kfa+++  + k+ +++++++de+ r+W  +l+y+ k+ r++     +eF   n+Lk+gD+++F l++r + f  v+ 
  XP_024984272.1 135 SKITPYYIKSSKLSVPLKFARSNgLITKRIHRQVIVRDERRRTWPATLSYNEKQIRILV---CREFKVKNHLKVGDTCMFVLVKRgEVF--VFD 223
                     456899999999***********6445568889***************99999999654...69*****************99876666..555 PP
2B3598.5e-19259349295
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                     f+ +++++++++++l+lp +f++++g++   + +++l+de++rsWev l  r  +gr ++l+ G +  v angLkegD++ F+l+++ +++ +vv
  XP_024984272.1 259 FTSTLKPYTFRKSILYLPIDFVRSNGLNI--G-KMILRDEKSRSWEVVL--REMGGRkFYLGIGFRALVVANGLKEGDVFKFELIENkKNKPPVV 348
                     4556699******************9994..4.6***************..5555555***************************9966666666 PP

                     E CS
              B3  95 k 95 
                      
  XP_024984272.1 349 N 349
                     4 PP
3B346.66.1e-153864641595
                     -EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3  15 rlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      l lp +fa+++g+   +s +++l++ e+ r   v+l  ++++++ +++++GWk+F+ angLkegD + F+ +++ +++lvv 
  XP_024984272.1 386 FLHLPIEFAKKNGLL--CSGEMILRNgEDERLCIVEL--KNHKNKyIYIGRGWKDFCVANGLKEGDCFKFEIVDNIDEKLVVN 464
                     489*********999..7889****978889999999..888888799***********************999977778876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    
MADAPTHFFK FIRPPFNLNL SIPRAFLPNL KGGRCSKAIL RRGGHKWPVD IVDGVFSGDG  60
WRKCVMENGV QEFDFMVFKH QGNMMFDFLV FDPSACEKQY PNPSDEMDVK DHLTESESEK  120
EEAKHELGDD RCFVSKITPY YIKSSKLSVP LKFARSNGLI TKRIHRQVIV RDERRRTWPA  180
TLSYNEKQIR ILVCREFKVK NHLKVGDTCM FVLVKRGEVF VFDFRKIGKK PVKNYTRVNE  240
TNSIIKKATR STSNDHPYFT STLKPYTFRK SILYLPIDFV RSNGLNIGKM ILRDEKSRSW  300
EVVLREMGGR KFYLGIGFRA LVVANGLKEG DVFKFELIEN KKNKPPVVNF SCNGNSRMPK  360
EGEDDHARPY FISKLKSYCL RKTAPFLHLP IEFAKKNGLL CSGEMILRNG EDERLCIVEL  420
KNHKNKYIYI GRGWKDFCVA NGLKEGDCFK FEIVDNIDEK LVVNFYVLKN P
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.19e-41B3 family protein