PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024984251.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 448aa MW: 49733.9 Da PI: 6.2746

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024984251.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76.6	4e-24	114	221	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.....................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.ts 73 +Wt+++v++Li ++ ++++++ +++ +kk++W++vs++m+ergf +sp+qC++k+++lnkryk+++++ +k+ ++ XP_024984251.1 114 KWTDNMVRLLIMVVFYIGDEVASDQppgsdtaaakkkgggggggvlQKKGKWKSVSRAMMERGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtAC 208 7******************9987888899999999****************************************************55 PP trihelix 74 essstcpyfdqle 86 +++++ +++++++ XP_024984251.1 209 KVVENQSLLESMD 221 ***********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence
MDTNGIFSSS SGGSGMLGLE MSLSHHHHPQ QNPNFLHQQP PFAAAASGGG GAKQAYPYAP 60 KQRTSPISDE EEPHSNNVNN PSTTEDSGGG GGGGGGGGSG DGKLRKGSPW QRMKWTDNMV 120 RLLIMVVFYI GDEVASDQPP GSDTAAAKKK GGGGGGGVLQ KKGKWKSVSR AMMERGFYVS 180 PQQCEDKFND LNKRYKRVND ILGKGTACKV VENQSLLESM DHLPAKMKEE AKKLLNSKHL 240 FFREMCAYHN SCGGGSGGSG AAHHSSPPEI TTTEQPPSYT HHRQNCVHSN DNEEEEDDDG 300 DGDEEDDDGD GDRYHPDDEE DEGLSSRKRG RTGDNDGHES IIQQFRGEIS CVIQDLTKSV 360 WEKRQWMKGR MMQLEEQRVG FQGQSYELEK QRLKWVKFSC KKEREMEVEK LRNERMKLEN 420 ERMVLLLRQK DLELVDLQQQ YSSSNAHK

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence

MDTNGIFSSS SGGSGMLGLE MSLSHHHHPQ QNPNFLHQQP PFAAAASGGG GAKQAYPYAP  60
KQRTSPISDE EEPHSNNVNN PSTTEDSGGG GGGGGGGGSG DGKLRKGSPW QRMKWTDNMV  120
RLLIMVVFYI GDEVASDQPP GSDTAAAKKK GGGGGGGVLQ KKGKWKSVSR AMMERGFYVS  180
PQQCEDKFND LNKRYKRVND ILGKGTACKV VENQSLLESM DHLPAKMKEE AKKLLNSKHL  240
FFREMCAYHN SCGGGSGGSG AAHHSSPPEI TTTEQPPSYT HHRQNCVHSN DNEEEEDDDG  300
DGDEEDDDGD GDRYHPDDEE DEGLSSRKRG RTGDNDGHES IIQQFRGEIS CVIQDLTKSV  360
WEKRQWMKGR MMQLEEQRVG FQGQSYELEK QRLKWVKFSC KKEREMEVEK LRNERMKLEN  420
ERMVLLLRQK DLELVDLQQQ YSSSNAHK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	1e-99	Trihelix family protein