PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024984215.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 328aa    MW: 36337.6 Da    PI: 4.9652
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024984215.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.73.2e-11150193755
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + Er+RR+ +++++  Lr+l+P+      +K++Ka+i+  A +YI++Lq
  XP_024984215.1 150 ISERKRRSGMKEKLYALRSLVPNI-----TKMDKASIVGDAARYIQELQ 193
                     67*********************7.....7******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MDERADSSEN HISHFNGGNY MFQGDFMPET EFDNFISTIR TETADPIEKF CFDYECNHFT  60
NCCTDLQLPP TSYGLNQSVI AGAGACTEFG GYDAMDPNVN LIWNQEGDQD LKGSDVYGDD  120
HSSETATTGN PDTPGRSGGG TKTDRSRTLI SERKRRSGMK EKLYALRSLV PNITKMDKAS  180
IVGDAARYIQ ELQTQARNLK TDIATIEAAK DQKSSSQNSK KIQKSRSFPL LKKISKMDMF  240
QVEEKGYYVR LVCNTGQGVA VSLHKALESI TSFQVQSSNL ATVGDSFVLT FTLNVTVCEF  300
DINLPNLKLW LAGAFLNQGF EFTTFPSA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.13e-76bHLH family protein