PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024984211.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 337aa MW: 37885.7 Da PI: 7.2054

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024984211.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.5	9.6e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l++ + ++G+g +W + +++ g++R++k+c++rw++yl XP_024984211.1 14 KGPWSPEEDAKLKEFIDKHGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	37.5	5.6e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++++Ed ++ + + G++ W+ Ia ++ gRt++++k++w++ XP_024984211.1 69 GEFSEDEDRIICSLYANIGSR-WSIIAGQLP-GRTDNDIKNYWNT 111 789****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDAKLKEFID KHGTGGNWIA LPHKAGLKRC GKSCRLRWLN 60 YLRPNIKHGE FSEDEDRIIC SLYANIGSRW SIIAGQLPGR TDNDIKNYWN TKLRKKLLAM 120 LPSFQKKPSL FPSMPLSSPP FSDLHKSDSY FNPNSSSFNC NYNPNFLNVS NTINSHLPAT 180 ATTLIHDHIN VTDLFSPLPP LSNPNLTGVY YPDQVKERML MFGGGDQVST DCSSSEGGGG 240 GCMSQIKDHH RMIKQEEQFG VQGFEDQMHS LMTDEHKGYF KNHVSPLHNN LEEVKQLNNS 300 SSSIISRYMQ MDDDENKTTH IISDGCYVMI DGGTTHE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	5e-77	MYB family protein