PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024984137.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 259aa    MW: 28702.3 Da    PI: 7.3028
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024984137.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.7e-1386137255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +  h e+Er+RR+++ + ++ Lr llP  +   ++K s ++   +Av+YIk++q
  XP_024984137.1  86 KLVHREIERQRRQEMAKLYASLRGLLPLEF--IKGKRSTSDHMHQAVNYIKHMQ 137
                     667*************************65..*********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MFSFQQSDEL GFHEIPSTIS FQQPAPNQQD LIVELHDHVT MEGNLNPSAS KARKRYGYQS  60
PSKANSATTD QGLGVGDSKD EHTQKKLVHR EIERQRRQEM AKLYASLRGL LPLEFIKGKR  120
STSDHMHQAV NYIKHMQENI KVLSGKRDRL KKFAETTAGG GGSGTNTNES LMNLVPNTVS  180
ISSCNDGIEI LINSCSIEDG FPLSRVLKAI ASEGLNVISC ISTKVNERVF HSLQSEVNDP  240
LSTDLSMLQQ RLTAVANDY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.11e-41bHLH family protein