PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024984098.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 676aa MW: 78527.6 Da PI: 9.2211

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024984098.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.2	1.2e-22	76	170	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +Y++YA ++GF+v ++++k++ ++g+i +r+fvCs+eg++++++ + e++ r+++ +r+gC+a+lk++++k g +e++++++eHnH+l XP_024984098.1 76 MYRDYADKAGFDVHVHAKKTN-KHGNIQNRWFVCSREGNPNKRQFNsldiqpGERRYRNTNLKRCGCNACLKIHLTKdGGCYEIYEFVEEHNHAL 169 8***********9988777.7777**************999998999999**************9899************9 PP FAR1 90 a 90 + XP_024984098.1 170 F 170 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 676 aa Download sequence
MNSCYLREFS AILAAMTIVD MLNIVRFDDL TPPHTDFEYD IGETLEGSKY FIPIVDVALK 60 PKTNAQYATL NDAERMYRDY ADKAGFDVHV HAKKTNKHGN IQNRWFVCSR EGNPNKRQFN 120 SLDIQPGERR YRNTNLKRCG CNACLKIHLT KDGGCYEIYE FVEEHNHALF NVNDRRFSRK 180 NRQMKYTNFK TVLNSSSYKV GARRAHRIQT ALNGGFEHTR VSEIDFKNFK RDVVACVGNK 240 DAKMLINKLS NRRDVADEVA RINYKEFGDV ISFDGTFRTN KHAMIFVPFL AVDNTRLPLS 300 SASYPDGVYG SQTQTLYMAH YEESAFKVVA IYTQVSVALN QDPNFNKVIN KLVRNIHIGP 360 AEFERRWHDM IEQYNLGGDT WFTYMYAIRH SWIPAFYKDT PMSAIEKPRY RQSVHETVTR 420 TTNPKFVTPL RLESYASRIY SQNVFFDIQK EIKKAVWCCA IENVECRDVL KTFVISHKMK 480 KSSENLTYLV NRNYSTDTVE CECNLFTRNG YLCRHAFKVL INDEVEFIPD RYVLRRWKRQ 540 LVPVQIQSAR VRYGEVDAKK EKCIIDVYSK VDEIISIARN DKSILARLER NLDTFMVDIE 600 KKVPYEDPSQ QRMDAIREHL GVSIPDEVDI LLPSGIRNKR CGTGKRLAIS YATWRPVQQC 660 CATAVPLQLH HAISRT

Sequence ? help Back to Top

Protein Sequence Length: 676 aa Download sequence

MNSCYLREFS AILAAMTIVD MLNIVRFDDL TPPHTDFEYD IGETLEGSKY FIPIVDVALK  60
PKTNAQYATL NDAERMYRDY ADKAGFDVHV HAKKTNKHGN IQNRWFVCSR EGNPNKRQFN  120
SLDIQPGERR YRNTNLKRCG CNACLKIHLT KDGGCYEIYE FVEEHNHALF NVNDRRFSRK  180
NRQMKYTNFK TVLNSSSYKV GARRAHRIQT ALNGGFEHTR VSEIDFKNFK RDVVACVGNK  240
DAKMLINKLS NRRDVADEVA RINYKEFGDV ISFDGTFRTN KHAMIFVPFL AVDNTRLPLS  300
SASYPDGVYG SQTQTLYMAH YEESAFKVVA IYTQVSVALN QDPNFNKVIN KLVRNIHIGP  360
AEFERRWHDM IEQYNLGGDT WFTYMYAIRH SWIPAFYKDT PMSAIEKPRY RQSVHETVTR  420
TTNPKFVTPL RLESYASRIY SQNVFFDIQK EIKKAVWCCA IENVECRDVL KTFVISHKMK  480
KSSENLTYLV NRNYSTDTVE CECNLFTRNG YLCRHAFKVL INDEVEFIPD RYVLRRWKRQ  540
LVPVQIQSAR VRYGEVDAKK EKCIIDVYSK VDEIISIARN DKSILARLER NLDTFMVDIE  600
KKVPYEDPSQ QRMDAIREHL GVSIPDEVDI LLPSGIRNKR CGTGKRLAIS YATWRPVQQC  660
CATAVPLQLH HAISRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-31	FAR1 family protein