PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_024984059.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 260aa MW: 29281.8 Da PI: 6.3211 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.4 | 3.3e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien s rqvtfskRr+g+lKKA+EL vLCdaev +i+fs+tg+ly++ss XP_024984059.1 9 KKIENVSTRQVTFSKRRAGLLKKAHELAVLCDAEVGIIVFSNTGRLYDFSS 59 68***********************************************96 PP | |||||||
2 | K-box | 62 | 2.3e-21 | 80 | 169 | 10 | 99 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + ++ + q el+ Lk+e+ L++e+ +l+G++L+ s++eL++Leq+L++sl +i++kK+ +l+e+ie++ +ke+el en+ Lr +++ XP_024984059.1 80 LQVEMRQEQAELETLKNEVARLRSENARLMGNNLGGTSVQELHKLEQKLNDSLISIKDKKDAMLFEEIERSNRKERELGYENEVLRGEID 169 455678899****************************************************************************99886 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 260 aa Download sequence |
MGRGKIEIKK IENVSTRQVT FSKRRAGLLK KAHELAVLCD AEVGIIVFSN TGRLYDFSSS 60 SMRGIIDRYN RATEPSTSQL QVEMRQEQAE LETLKNEVAR LRSENARLMG NNLGGTSVQE 120 LHKLEQKLND SLISIKDKKD AMLFEEIERS NRKERELGYE NEVLRGEIDK LTRFIPLTQQ 180 PSQPGFLEYT PAAAGPSSSA GLSRQDRVSP DTVCYYGSDN TDSETALQLR PPCSDHLKMK 240 EEAKRESSSS RSSDSKDMEE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G13790.1 | 8e-51 | MIKC_MADS family protein |