PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024983995.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family LBD
Protein Properties Length: 277aa    MW: 30184.8 Da    PI: 6.3103
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024983995.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260101.11e-3141081100
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q 
  XP_024983995.1   4 SCNGCRVLRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQN 98 
                     6********************************************************************************************** PP

          DUF260  91 kaelallkee 100
                     ++e++l++++
  XP_024983995.1  99 AVEAVLQGSP 108
                     ***9998765 PP

Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQNAV EAVLQGSPIT QIASDTAETN  120
NGPPLKAYDI RHIMKDENSG GSNELHRVRT RCRFKRSAAK GKASRVWIGS SEEESGVIEH  180
NNDLSSHESA LSHQSEAAHA VEGESREIVE ESLASVETPP SKKHVETEAE NIELELTLGY  240
EPVDRSKGKE VTVSAAFDNS GTGVGISSVD LRLDYPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-103LBD family protein