PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024983975.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

GeBP

Protein Properties

Length: 396aa MW: 43798.6 Da PI: 6.0762

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024983975.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	128	4e-40	172	269	2	98
DUF573 2 lfqrlwseeDeivlLqGlidfkak.tgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 lfqrlwse+Deiv+L+G+id+k++ +g +p++d+ af+ef+kks++++vs+ qlv+K+rrLKkK+ ++ ++ k+gk+ sfsk+h+qk +elsk i XP_024983975.1 172 LFQRLWSEDDEIVILKGMIDYKTEkNGENPVADMGAFHEFIKKSLHVDVSRAQLVDKVRRLKKKYVNNASREKNGKDRSFSKSHEQKGYELSKLI 266 79*****************7651577***************************************************************** PP DUF573 96 Wgs 98 Wgs XP_024983975.1 267 WGS 269 *95 PP

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence
MAQNRQPELK PNHSSSSEEE EEEEEASGSE DEQTSCSESE EVSDSDSQEK QKQEPKKPVI 60 AAPQSAKKPQ APDLSSSGTE GSDSDTDSDS PPKKPVVADP TIKPISSKPM EREEGTNPES 120 KSAKKSGSRT SSTPSPAKTG KRPPPATAPA IEKDSKKAKK STAADEDSKK QLFQRLWSED 180 DEIVILKGMI DYKTEKNGEN PVADMGAFHE FIKKSLHVDV SRAQLVDKVR RLKKKYVNNA 240 SREKNGKDRS FSKSHEQKGY ELSKLIWGSN SHTSGTESKK TQNHNPAKGN AASTSSGVAL 300 LKANGVEMEK EVSTMEVEKN MDVSRFVQYG RNNDCPILQE EIVKAGLELV EASKREELEE 360 KWKKLKKQEL QLYVMRMELL KEQSALVYEA INSSGN

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence

MAQNRQPELK PNHSSSSEEE EEEEEASGSE DEQTSCSESE EVSDSDSQEK QKQEPKKPVI  60
AAPQSAKKPQ APDLSSSGTE GSDSDTDSDS PPKKPVVADP TIKPISSKPM EREEGTNPES  120
KSAKKSGSRT SSTPSPAKTG KRPPPATAPA IEKDSKKAKK STAADEDSKK QLFQRLWSED  180
DEIVILKGMI DYKTEKNGEN PVADMGAFHE FIKKSLHVDV SRAQLVDKVR RLKKKYVNNA  240
SREKNGKDRS FSKSHEQKGY ELSKLIWGSN SHTSGTESKK TQNHNPAKGN AASTSSGVAL  300
LKANGVEMEK EVSTMEVEKN MDVSRFVQYG RNNDCPILQE EIVKAGLELV EASKREELEE  360
KWKKLKKQEL QLYVMRMELL KEQSALVYEA INSSGN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00390.1	3e-30	GeBP family protein