PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024983873.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 372aa MW: 41081.5 Da PI: 6.7366

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024983873.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.5	2.9e-07	149	170	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H XP_024983873.1 149 FCNICGKGFKRDANLRMHMRAH 170 6*******************99 PP
2	zf-C2H2	11.8	0.00074	269	285	5	21
TTTEEESSHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHir 21 Cg+sFsrk+ L H+ XP_024983873.1 269 SCGTSFSRKDKLFGHMA 285 5**************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence
MNSDDPADAA DRLQVPLLNL SKVRSRIDHV QRFLSDSLNS NTVIGEAQME IVSKEISSAI 60 NQVIVNGTAL LSCSRLPKSK SEKTNASEPS TSLTFDGKNL SESDLNLNNL KHDMELGFPK 120 TEVFDDENGV DWDIVELDAV ELLAEHLHFC NICGKGFKRD ANLRMHMRAH GNKFKTLEAL 180 AKPEKSVLAS ESGRGGRTRF SCPFGGCSRN KLHKKFRPLK SVICVKNHFK RSHCPKMYSC 240 NRCHKKNFSV LADLKSHLKH CGETKWKCSC GTSFSRKDKL FGHMALFEGH MPAMPEEVVA 300 EEDEKAKGVA ALVVENAEDG SSNPVKGMDW VDDNMDDGFF NGLLDGLGSI GDDFCIQDIL 360 GGSSNIGTDW SL

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence

MNSDDPADAA DRLQVPLLNL SKVRSRIDHV QRFLSDSLNS NTVIGEAQME IVSKEISSAI  60
NQVIVNGTAL LSCSRLPKSK SEKTNASEPS TSLTFDGKNL SESDLNLNNL KHDMELGFPK  120
TEVFDDENGV DWDIVELDAV ELLAEHLHFC NICGKGFKRD ANLRMHMRAH GNKFKTLEAL  180
AKPEKSVLAS ESGRGGRTRF SCPFGGCSRN KLHKKFRPLK SVICVKNHFK RSHCPKMYSC  240
NRCHKKNFSV LADLKSHLKH CGETKWKCSC GTSFSRKDKL FGHMALFEGH MPAMPEEVVA  300
EEDEKAKGVA ALVVENAEDG SSNPVKGMDW VDDNMDDGFF NGLLDGLGSI GDDFCIQDIL  360
GGSSNIGTDW SL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.3	2e-75	C2H2 family protein