PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024983809.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 337aa    MW: 37814.5 Da    PI: 6.5076
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024983809.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.68.9e-162774148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l ++  + G g+W+ Iar  g+ R++k+c++rw +yl
   XP_024983809.1 27 KGLWSPEEDEKLMNYMIRNGQGCWTDIARNAGLQRCGKSCRLRWINYL 74
                     678*******************************************97 PP
2Myb_DNA-binding521.6e-1680123146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E++l+v+++ +lG++ W+ Ia++++ gRt++++k++w++
   XP_024983809.1  80 RGAFSPQEEQLIVHLHSLLGNR-WSQIAARLP-GRTDNEIKNFWNS 123
                      89********************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    
MRKPDQIGRE KVCNDTNSNK GMLKLRKGLW SPEEDEKLMN YMIRNGQGCW TDIARNAGLQ  60
RCGKSCRLRW INYLRPDLKR GAFSPQEEQL IVHLHSLLGN RWSQIAARLP GRTDNEIKNF  120
WNSTIKKRLK VNNNVSRSSP NNSTDDTSSD PSRDIMGAGM FMSMHDHDLM TMCMDSSLTS  180
TTTTTTSSSS MHNNSMLIKG HDHFGQLPPL LQNNINRDAS SLFNVSSCLG EVGMGGDGQY  240
GDCGILEVPY MMGMENDNTN LGSRVMDGDI NANATNYMFD KKSANFNHHF NGDIDGKVKV  300
EEVVGLENHW SGESLKMGEW DLEGLFANIP SLPYLDF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.14e-67MYB family protein