PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024983757.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 480aa MW: 54856.6 Da PI: 7.9651

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024983757.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	92.6	3.9e-29	101	187	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+ +e++aL+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykkikeg+ +r +e+++++++f++lea XP_024983757.1 101 RWPTEETRALLEIRSRLDSKFKEANQKGPLWDEVSRIMsMEHGYKRSGKKCNEKFENLYKYYKKIKEGKAGR-QENKKHYRFFRHLEA 187 8*******************************************************************98.566679****985 PP
2	trihelix	46.9	7.4e-15	367	449	2	81
trihelix 2 WtkqevlaLiearremeerlrrg..klkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 W ++e+ +Li +r+ me+r+++g + ++ lWee++ +m+ g+ +r++ Ck+kw+++n + k+ ek+r +s ss ++ XP_024983757.1 367 WEENEITQLIHLRSGMETRFEEGgtSMAEVLWEEIALRMACLGYnNRNALICKSKWDDVNFLLRTKKQKEKSRcSSLSS-DHQN 449 *******************96337899***********889***********************9543333.3333 PP

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence
MEEKYGMRDL TTHYTKGRPI FPSIPQPQPQ PQPPCDLHYA MVMLGGGGGG GGGGGGMTSF 60 GFDSTMDVTA STAAAAAATS DHSGGGGNGL DMEIGGCDSG RWPTEETRAL LEIRSRLDSK 120 FKEANQKGPL WDEVSRIMSM EHGYKRSGKK CNEKFENLYK YYKKIKEGKA GRQENKKHYR 180 FFRHLEALYG ETGTSTNPDP KPPSISNLNI ETHTFQANPH LPNNPSMFDS SSCDYKNYNA 240 TVPPFRDDVY SHCVERNKRR PGRKCWKTKI TDFIETKVQT LMEKQEAWMV KMMKTIDEKE 300 KERILKEERW RKEASTRYEM ENKFRASERA WMESRDSALM EALLKLTTKE SNDRKYEKTG 360 DSSVSNWEEN EITQLIHLRS GMETRFEEGG TSMAEVLWEE IALRMACLGY NNRNALICKS 420 KWDDVNFLLR TKKQKEKSRC SSLSSDHQNY NMFDHGTGEI RGVDPQNDGG YRVLMNDDWN

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence

MEEKYGMRDL TTHYTKGRPI FPSIPQPQPQ PQPPCDLHYA MVMLGGGGGG GGGGGGMTSF  60
GFDSTMDVTA STAAAAAATS DHSGGGGNGL DMEIGGCDSG RWPTEETRAL LEIRSRLDSK  120
FKEANQKGPL WDEVSRIMSM EHGYKRSGKK CNEKFENLYK YYKKIKEGKA GRQENKKHYR  180
FFRHLEALYG ETGTSTNPDP KPPSISNLNI ETHTFQANPH LPNNPSMFDS SSCDYKNYNA  240
TVPPFRDDVY SHCVERNKRR PGRKCWKTKI TDFIETKVQT LMEKQEAWMV KMMKTIDEKE  300
KERILKEERW RKEASTRYEM ENKFRASERA WMESRDSALM EALLKLTTKE SNDRKYEKTG  360
DSSVSNWEEN EITQLIHLRS GMETRFEEGG TSMAEVLWEE IALRMACLGY NNRNALICKS  420
KWDDVNFLLR TKKQKEKSRC SSLSSDHQNY NMFDHGTGEI RGVDPQNDGG YRVLMNDDWN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	2e-78	Trihelix family protein