PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024983676.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 385aa MW: 42558.2 Da PI: 6.5196 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 49.1 | 9.4e-16 | 212 | 267 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HH.HHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsae.ereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ + ++ LA++l+L rqV vWFqNrRa+ k XP_024983676.1 212 RKKLRLSKEQSAYLEESFKEHNTLNPQkQKLALAEQLNLRPRQVEVWFQNRRARTK 267 788899**************999997626779**********************98 PP | |||||||
2 | HD-ZIP_I/II | 121 | 6e-39 | 212 | 303 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLep.erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq++ LEesF+e+++L+p ++K +la++L+l+prqv+vWFqnrRARtk+kq+E+dye+Lkr++++l++en+rL+ke +eLr +lk XP_024983676.1 212 RKKLRLSKEQSAYLEESFKEHNTLNPqKQKLALAEQLNLRPRQVEVWFQNRRARTKLKQTEVDYEYLKRCCETLTDENRRLHKELQELR-ALK 303 69***********************94579**********************************************************9.555 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence |
MELGLSLGDA PSKATDGFTA STTTTTPVNK SLGFCMALGM NPSNGTTNKG FPEKPQIQDD 60 QDDGDEHDDD DDDDEEHEKD NQRILKENGG IKEMIVSSQR ICSLNPPVQL DLLPSAPVPR 120 HTPFPWSSDN EGGSSGNAAA GRGFDVKRMP AAVGTEEATS SFRLDFMSYR RTGNVNGGSK 180 NNKRGFEIGN EAIEVERASS RASDEDENGI SRKKLRLSKE QSAYLEESFK EHNTLNPQKQ 240 KLALAEQLNL RPRQVEVWFQ NRRARTKLKQ TEVDYEYLKR CCETLTDENR RLHKELQELR 300 ALKTSSNPFY RQLPATTLTM CPSCERVATT SAPPPSATLS KQVEQNSKKA STTPLTLSAK 360 PRSLIFPVSH APPCNNSHHQ PAAPS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 211 | 217 | SRKKLRL |
2 | 262 | 270 | RRARTKLKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 5e-77 | HD-ZIP family protein |