PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024983675.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HD-ZIP

Protein Properties

Length: 387aa MW: 42661.3 Da PI: 6.5196

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024983675.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.6	9.2e-18	215	269	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LA++l+L rqV vWFqNrRa+ k XP_024983675.1 215 RKKLRLSKEQSAYLEESFKEHNTLNPKQKLALAEQLNLRPRQVEVWFQNRRARTK 269 788899***********************************************98 PP
2	HD-ZIP_I/II	127.1	7.8e-41	215	305	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq++ LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+dye+Lkr++++l++en+rL+ke +eLr +lk XP_024983675.1 215 RKKLRLSKEQSAYLEESFKEHNTLNPKQKLALAEQLNLRPRQVEVWFQNRRARTKLKQTEVDYEYLKRCCETLTDENRRLHKELQELR-ALK 305 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MELGLSLGDA PSKATDGFTA STTTTTPVNK SLGFCMALGM NPSNGTTNKG FPEKPQIQDD 60 QDDGDEHDDD DDDDEEHEKD NQRILKENGG IKEMIVSSQR ICSLNPPVQL DLLPSAPVPR 120 HTPFPWSSDN GSSEGGSSGN AAAGRGFDVK RMPAAVGTEE ATSSFRLDFM SYRRTGNVNG 180 GSKNNKRGFE IGNEAIEVER ASSRASDEDE NGISRKKLRL SKEQSAYLEE SFKEHNTLNP 240 KQKLALAEQL NLRPRQVEVW FQNRRARTKL KQTEVDYEYL KRCCETLTDE NRRLHKELQE 300 LRALKTSSNP FYRQLPATTL TMCPSCERVA TTSAPPPSAT LSKQVEQNSK KASTTPLTLS 360 AKPRSLIFPV SHAPPCNNSH HQPAAPS

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MELGLSLGDA PSKATDGFTA STTTTTPVNK SLGFCMALGM NPSNGTTNKG FPEKPQIQDD  60
QDDGDEHDDD DDDDEEHEKD NQRILKENGG IKEMIVSSQR ICSLNPPVQL DLLPSAPVPR  120
HTPFPWSSDN GSSEGGSSGN AAAGRGFDVK RMPAAVGTEE ATSSFRLDFM SYRRTGNVNG  180
GSKNNKRGFE IGNEAIEVER ASSRASDEDE NGISRKKLRL SKEQSAYLEE SFKEHNTLNP  240
KQKLALAEQL NLRPRQVEVW FQNRRARTKL KQTEVDYEYL KRCCETLTDE NRRLHKELQE  300
LRALKTSSNP FYRQLPATTL TMCPSCERVA TTSAPPPSAT LSKQVEQNSK KASTTPLTLS  360
AKPRSLIFPV SHAPPCNNSH HQPAAPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	214	220	SRKKLRL
2	264	272	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	6e-79	HD-ZIP family protein