PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024983674.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 388aa MW: 42789.4 Da PI: 6.5196 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 49.1 | 9.5e-16 | 215 | 270 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HH.HHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsae.ereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ + ++ LA++l+L rqV vWFqNrRa+ k XP_024983674.1 215 RKKLRLSKEQSAYLEESFKEHNTLNPQkQKLALAEQLNLRPRQVEVWFQNRRARTK 270 788899**************999997626779**********************98 PP | |||||||
2 | HD-ZIP_I/II | 121 | 6.1e-39 | 215 | 306 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLep.erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq++ LEesF+e+++L+p ++K +la++L+l+prqv+vWFqnrRARtk+kq+E+dye+Lkr++++l++en+rL+ke +eLr +lk XP_024983674.1 215 RKKLRLSKEQSAYLEESFKEHNTLNPqKQKLALAEQLNLRPRQVEVWFQNRRARTKLKQTEVDYEYLKRCCETLTDENRRLHKELQELR-ALK 306 69***********************94579**********************************************************9.555 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence |
MELGLSLGDA PSKATDGFTA STTTTTPVNK SLGFCMALGM NPSNGTTNKG FPEKPQIQDD 60 QDDGDEHDDD DDDDEEHEKD NQRILKENGG IKEMIVSSQR ICSLNPPVQL DLLPSAPVPR 120 HTPFPWSSDN GSSEGGSSGN AAAGRGFDVK RMPAAVGTEE ATSSFRLDFM SYRRTGNVNG 180 GSKNNKRGFE IGNEAIEVER ASSRASDEDE NGISRKKLRL SKEQSAYLEE SFKEHNTLNP 240 QKQKLALAEQ LNLRPRQVEV WFQNRRARTK LKQTEVDYEY LKRCCETLTD ENRRLHKELQ 300 ELRALKTSSN PFYRQLPATT LTMCPSCERV ATTSAPPPSA TLSKQVEQNS KKASTTPLTL 360 SAKPRSLIFP VSHAPPCNNS HHQPAAPS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 214 | 220 | SRKKLRL |
2 | 265 | 273 | RRARTKLKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 4e-77 | HD-ZIP family protein |