PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024983646.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 350aa MW: 39298.3 Da PI: 9.6543

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024983646.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	61.8	1.7e-19	35	126	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr..tsessstcpyfdqle 86 +W+++e+ aLi+a+r+++ +lrrg+l++ +W+ev++ + + ++++qC++k+e+l+kry+++ ++ ++ + s++++f++++ XP_024983646.1 35 CWSHDETVALIDAYRDKWYSLRRGNLRASHWQEVADGVaarcPLGNPPKTSIQCRHKMEKLRKRYRAEIQRIGNTprGHRYPSSWVHFKRMD 126 8********************************99954434445599**************99988775323566789****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MASSNSPSSP QEPSNALVAQ QPTSTAASRR LPPPCWSHDE TVALIDAYRD KWYSLRRGNL 60 RASHWQEVAD GVAARCPLGN PPKTSIQCRH KMEKLRKRYR AEIQRIGNTP RGHRYPSSWV 120 HFKRMDSMEL GSSSSDPSVD PINQDEEEED GRGDENEDDL LLYPKGIKQA IALPLNRRYQ 180 GSIGNGNGNG NGNGVRIKIP NIAAVPPPPP SALNLYNSNR SFDDYPPSMN PHYGSGKGSR 240 DGYMKEAFGT EKDRNVGGGG GMKRREDMEN NGSHLMDEMV AAIQKLGDGF VKMERMKMDM 300 ARELESMRMK MEMKRTEMIL ESQQRLVDSF SKTVMEKKNK KIKRMPTPES

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MASSNSPSSP QEPSNALVAQ QPTSTAASRR LPPPCWSHDE TVALIDAYRD KWYSLRRGNL  60
RASHWQEVAD GVAARCPLGN PPKTSIQCRH KMEKLRKRYR AEIQRIGNTP RGHRYPSSWV  120
HFKRMDSMEL GSSSSDPSVD PINQDEEEED GRGDENEDDL LLYPKGIKQA IALPLNRRYQ  180
GSIGNGNGNG NGNGVRIKIP NIAAVPPPPP SALNLYNSNR SFDDYPPSMN PHYGSGKGSR  240
DGYMKEAFGT EKDRNVGGGG GMKRREDMEN NGSHLMDEMV AAIQKLGDGF VKMERMKMDM  300
ARELESMRMK MEMKRTEMIL ESQQRLVDSF SKTVMEKKNK KIKRMPTPES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	7e-59	Trihelix family protein