PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024983510.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 418aa MW: 46764.3 Da PI: 7.9588

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024983510.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.4	4.5e-12	355	400	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el P+ +k s a++L +Av+YIk+Lq XP_024983510.1 355 SIAERVRRTRISDRMKKLQELFPTM----DKQTSTADMLDLAVQYIKDLQ 400 689*******************7....688***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MYGDGGSSDA IARDMNSLLH SSTFKHRSEG EFAKIKELIS SDSYSNYNDH EHNHNHNHNL 60 SRNQNQNQNH QRHDLGGQNE SSLMRYRSAP SSFYANLLDE SGCDDFLAPV DTSSNHEPEE 120 RFFSSNQQQQ QKFRSDSHEF LQYASTSASM KLETKEAGIQ KLDLPPVSTA MYGGSSQQAP 180 HFSPCNGDGN YTNHNNLGSS STFRTMNSTS TNLIRQSSSP AGLLSSLNAE TGRRDVDKGN 240 PSSGLNNNHI SFSSQPSLSP MYLPQIVENT NEMNDSPYRS LKRTRDGDSK MFHSSITMDT 300 ESGASGHYTP SLIHHTSLPK TSSEKAVVEK FLRFQQDSIP CKTRAKRGCA THPRSIAERV 360 RRTRISDRMK KLQELFPTMD KQTSTADMLD LAVQYIKDLQ KDLQTLNNAR ARCTCSSK

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MYGDGGSSDA IARDMNSLLH SSTFKHRSEG EFAKIKELIS SDSYSNYNDH EHNHNHNHNL  60
SRNQNQNQNH QRHDLGGQNE SSLMRYRSAP SSFYANLLDE SGCDDFLAPV DTSSNHEPEE  120
RFFSSNQQQQ QKFRSDSHEF LQYASTSASM KLETKEAGIQ KLDLPPVSTA MYGGSSQQAP  180
HFSPCNGDGN YTNHNNLGSS STFRTMNSTS TNLIRQSSSP AGLLSSLNAE TGRRDVDKGN  240
PSSGLNNNHI SFSSQPSLSP MYLPQIVENT NEMNDSPYRS LKRTRDGDSK MFHSSITMDT  300
ESGASGHYTP SLIHHTSLPK TSSEKAVVEK FLRFQQDSIP CKTRAKRGCA THPRSIAERV  360
RRTRISDRMK KLQELFPTMD KQTSTADMLD LAVQYIKDLQ KDLQTLNNAR ARCTCSSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	3e-54	bHLH family protein