PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024983263.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

CAMTA

Protein Properties

Length: 857aa MW: 96372.9 Da PI: 8.3004

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024983263.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	157.2	3.3e-49	20	125	3	107
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 +e ++rwl++ ei++iL+n++k++l ++++ +p+ gsl+L++rk++ryfrkDG+ w+kkkdgk v+E+hekLK g+v+vl+cyYah+e+n +fqr XP_024983263.1 20 QEaQHRWLRPAEICEILTNYHKFQLRTSPPANPPAGSLFLFDRKVLRYFRKDGHRWRKKKDGKIVKEAHEKLKAGSVDVLHCYYAHGEDNDKFQR 114 5669***************************************************************************************** PP CG-1 97 rcywlLeeele 107 r+yw+L++e + XP_024983263.1 115 RSYWMLDKEVK 125 *****9966 PP

Sequence ? help Back to Top
Protein Sequence Length: 857 aa Download sequence
MAETKCYIPN QLLDLDQIQQ EAQHRWLRPA EICEILTNYH KFQLRTSPPA NPPAGSLFLF 60 DRKVLRYFRK DGHRWRKKKD GKIVKEAHEK LKAGSVDVLH CYYAHGEDND KFQRRSYWML 120 DKEVKEGYKS GSPHVLNADS GSLLQSSESS LSPGCCHASV DRNEQSASSR LNDGQSFKDV 180 GISSLDQPNR STFHAGYLDR EPFHPVPDSS TWTNFNGSAR DTITADVLSY KLTEARLDVG 240 SHSHDFLNGL FPDPLQVHAG FEAIDTSAVN CSIQNDDAGG LKKLDSFGRW MDKEMGGDCE 300 DSLLAANSGN YWNALETEND RDQASSLTHH MQLNTDSVGP SLAKEQQFSI LDFAPDWAYS 360 GTETKVLIAG TFVGDKKRWS EIKWCCMFGE IEVPAELVTE NTIRCQVPFH AAQRVPFYIT 420 CGNRLACSEV REFEYVEKPA EHPVDEDELV LMIRLSKLLS SLGIQRKWLG CSMMNCEKCK 480 LKDVICSLVR DKERSWKRIT EAFKGNSEEL LIQNLLKDKL YEQLLPEAHE TCQGLRMLDE 540 KGQGVIHLVS ALGYEWAVGP IVAAGVSSNF RDARGRTALH WASLYGREET VVALVKLGAF 600 AGAVDDPTGL NPGGQTAADL ASSKGHKGIA GYLAEEDLTS HLSALSVNGG NSAVANGDKE 660 HSLRGSVAAV RRSVHAAALI QDAFRARSFR QRQVSRNMNE ELVALATAAA ASSSHKVQKR 720 GEYEDYLQVA AASRIQQKYR GWKGRNDFLK IRERIVKIQA HFRGHQVRKH YKKVVWSVGI 780 VEKAILRWRR KSRGLRGFRV GKEEAAGEYD FLRIGRRQKY VGVEKALARV QSMARHPEAQ 840 EQYMRLVEKM KRHEEDR

Sequence ? help Back to Top

Protein Sequence Length: 857 aa Download sequence

MAETKCYIPN QLLDLDQIQQ EAQHRWLRPA EICEILTNYH KFQLRTSPPA NPPAGSLFLF  60
DRKVLRYFRK DGHRWRKKKD GKIVKEAHEK LKAGSVDVLH CYYAHGEDND KFQRRSYWML  120
DKEVKEGYKS GSPHVLNADS GSLLQSSESS LSPGCCHASV DRNEQSASSR LNDGQSFKDV  180
GISSLDQPNR STFHAGYLDR EPFHPVPDSS TWTNFNGSAR DTITADVLSY KLTEARLDVG  240
SHSHDFLNGL FPDPLQVHAG FEAIDTSAVN CSIQNDDAGG LKKLDSFGRW MDKEMGGDCE  300
DSLLAANSGN YWNALETEND RDQASSLTHH MQLNTDSVGP SLAKEQQFSI LDFAPDWAYS  360
GTETKVLIAG TFVGDKKRWS EIKWCCMFGE IEVPAELVTE NTIRCQVPFH AAQRVPFYIT  420
CGNRLACSEV REFEYVEKPA EHPVDEDELV LMIRLSKLLS SLGIQRKWLG CSMMNCEKCK  480
LKDVICSLVR DKERSWKRIT EAFKGNSEEL LIQNLLKDKL YEQLLPEAHE TCQGLRMLDE  540
KGQGVIHLVS ALGYEWAVGP IVAAGVSSNF RDARGRTALH WASLYGREET VVALVKLGAF  600
AGAVDDPTGL NPGGQTAADL ASSKGHKGIA GYLAEEDLTS HLSALSVNGG NSAVANGDKE  660
HSLRGSVAAV RRSVHAAALI QDAFRARSFR QRQVSRNMNE ELVALATAAA ASSSHKVQKR  720
GEYEDYLQVA AASRIQQKYR GWKGRNDFLK IRERIVKIQA HFRGHQVRKH YKKVVWSVGI  780
VEKAILRWRR KSRGLRGFRV GKEEAAGEYD FLRIGRRQKY VGVEKALARV QSMARHPEAQ  840
EQYMRLVEKM KRHEEDR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	1e-138	CAMTA family protein