PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024983251.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

DBB

Protein Properties

Length: 245aa MW: 27208.4 Da PI: 4.7169

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024983251.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.4	1.2e-07	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +e+ +++l C ++ lC+ C +e H H++ XP_024983251.1 4 QCDVCEKAPATLICCADEAALCARCDTEVHAAnklaskHQR 44 7*****************************65667777765 PP
2	zf-B_box	28.1	4.2e-09	53	94	2	37
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + + C+ ++ek + +fC +++ l+C+dC + +H+ H XP_024983251.1 53 KLPPCDICQEKTAFIFCVEDRALFCRDCDEPIHSAgslaanH 94 6789*****************************656666666 PP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence
MKIQCDVCEK APATLICCAD EAALCARCDT EVHAANKLAS KHQRLLLQTL SNKLPPCDIC 60 QEKTAFIFCV EDRALFCRDC DEPIHSAGSL AANHQRFLAT GIRVALSSSS AQEAPEKSHH 120 EPPPPSSKNV TDHVPQVVPM KTPTHQVSGY TSPSWAVDDL LQFSDFESPN KKEQLEFGEL 180 EWLTDYASVF GDEAAEVPQL PASQSINTTS YRQTKFYIPN NKKPRYEISN NDEDDDEHFT 240 VPDLG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31380.1	3e-86	DBB family protein