PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024983124.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 521aa MW: 57300.3 Da PI: 6.5908

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024983124.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.9	8.5e-09	373	420	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_024983124.1 373 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 420 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence
MEKHSFLTNE GTGIPHAWNS IFGMELESQV TELNCSSEQL SNCFFNRNWD NSMDQSDPFE 60 SALSSIVSSP ASSHPGIPIP GGCGGGDNMV LKELIGRLGS ICNSGEISPQ SCIHGNTSTN 120 TSCYNTPLNS PPKLNLSIMD HHQIQGNLTI PRNHQLPLAP FPVDPGFVER AARFSCFGGK 180 NSGVKESEFP HMVESGKLSR VSSNQSFKTA GSQFMGIQED KDGNGIPASD KKFSRLSMSL 240 TPENKELDNS MEESSLSEQI PGGETGIKAQ STNSNGRKRK AIPKGKGKEA QFSTLSAKEN 300 KTLAGAEKEE SDAKRSKPDE EGNAMEKEKE KEKEKKKTEG NQNQKQTKEN VKPPEPPKDY 360 IHVRARRGQA TDSHSLAERV RREKISERMK FLQDLVPGCN KVTGKAVMLD EIINYVQSLQ 420 RQVEFLSMKL ATVNPRTDVN MEALLSKDIF QARALMSNSM NQLDTSSQPF YGMIPDGQDN 480 PLMASMFWEN DLQSVVQMGL SQNQAQGFHG TMGTGQMKVE L

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence

MEKHSFLTNE GTGIPHAWNS IFGMELESQV TELNCSSEQL SNCFFNRNWD NSMDQSDPFE  60
SALSSIVSSP ASSHPGIPIP GGCGGGDNMV LKELIGRLGS ICNSGEISPQ SCIHGNTSTN  120
TSCYNTPLNS PPKLNLSIMD HHQIQGNLTI PRNHQLPLAP FPVDPGFVER AARFSCFGGK  180
NSGVKESEFP HMVESGKLSR VSSNQSFKTA GSQFMGIQED KDGNGIPASD KKFSRLSMSL  240
TPENKELDNS MEESSLSEQI PGGETGIKAQ STNSNGRKRK AIPKGKGKEA QFSTLSAKEN  300
KTLAGAEKEE SDAKRSKPDE EGNAMEKEKE KEKEKKKTEG NQNQKQTKEN VKPPEPPKDY  360
IHVRARRGQA TDSHSLAERV RREKISERMK FLQDLVPGCN KVTGKAVMLD EIINYVQSLQ  420
RQVEFLSMKL ATVNPRTDVN MEALLSKDIF QARALMSNSM NQLDTSSQPF YGMIPDGQDN  480
PLMASMFWEN DLQSVVQMGL SQNQAQGFHG TMGTGQMKVE L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-74	bHLH family protein