PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024983086.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 352aa MW: 40396.3 Da PI: 6.6057

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024983086.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.3	2.4e-56	21	148	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdee+v++yL++kv ++++++ +i e+d++k+ePwdLpkk+k +ekew+fF++rd+ky+tg r+nrat+sgyWkatgkd+e++++ XP_024983086.1 21 LPPGFRFHPTDEEIVTHYLTPKVLNRTFTA-IAIGEADLNKSEPWDLPKKAKMGEKEWFFFCQRDRKYPTGMRTNRATESGYWKATGKDREIFRA 114 79***********************999.88***********99999************************************** PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++lvg+kktLvfykgrap+gekt+Wvmhe+rle XP_024983086.1 115 VRKLVGMKKTLVFYKGRAPRGEKTNWVMHEFRLE 148 9****************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MMERSAQKMV KSNDDDALIG LPPGFRFHPT DEEIVTHYLT PKVLNRTFTA IAIGEADLNK 60 SEPWDLPKKA KMGEKEWFFF CQRDRKYPTG MRTNRATESG YWKATGKDRE IFRAVRKLVG 120 MKKTLVFYKG RAPRGEKTNW VMHEFRLEGK FSYYNMPKPS QEEWVVCRVF HKTTGAQKSP 180 VSDHGLNSYV EDLLDSPSLL PPLMDPSAMN LDPTFATNPI CYFSHTRPEK LEDNQDYKNI 240 LVSSCNYNFD TNTYQTDLSN QYVSKNLPYL ASTSALYWSN TDFKKEKDQH CIGSEKTSVS 300 RDTGVSNEMT ATTTETSFTS LLSKDGLRHT EYDPDDHVGT STFSELDSLL EY

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MMERSAQKMV KSNDDDALIG LPPGFRFHPT DEEIVTHYLT PKVLNRTFTA IAIGEADLNK  60
SEPWDLPKKA KMGEKEWFFF CQRDRKYPTG MRTNRATESG YWKATGKDRE IFRAVRKLVG  120
MKKTLVFYKG RAPRGEKTNW VMHEFRLEGK FSYYNMPKPS QEEWVVCRVF HKTTGAQKSP  180
VSDHGLNSYV EDLLDSPSLL PPLMDPSAMN LDPTFATNPI CYFSHTRPEK LEDNQDYKNI  240
LVSSCNYNFD TNTYQTDLSN QYVSKNLPYL ASTSALYWSN TDFKKEKDQH CIGSEKTSVS  300
RDTGVSNEMT ATTTETSFTS LLSKDGLRHT EYDPDDHVGT STFSELDSLL EY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.1	4e-96	NAC family protein