PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024982948.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 774aa MW: 90172.7 Da PI: 6.834

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024982948.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	58.1	3e-18	155	250	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 k+Y++YA+e+GF+vr s++k + ++g+it+r +vCskeg++ ++ + +++ +++++++ +C+a++k++ k + ++ev+k+ ++HnH XP_024982948.1 155 KMYRKYANEAGFDVRLSNKKIN-NKGRITSRFYVCSKEGRPPSKYFDsldvllGDHRIHNSNVKHSDCEACFKIHFVKeQRQYEVYKFIEQHNHM 248 68************988777.8888***********99998899999888999999***********999899***********9 PP FAR1 89 la 90 l+ XP_024982948.1 249 LF 250 97 PP

Sequence ? help Back to Top
Protein Sequence Length: 774 aa Download sequence
MDYMSFNETF SKDIVEESSV FDSMNDCQGF DYGGENATAV NNETIEDQCN YSMRNEDGCN 60 DRNETLSEHN DGGVVDFVDI GVASLSNEAE GFITDLIARW KDGTKTNSLL LLTNYYRSDG 120 MGETNDGSKC WFPNVNAEYK PKVGDGFETV ESAEKMYRKY ANEAGFDVRL SNKKINNKGR 180 ITSRFYVCSK EGRPPSKYFD SLDVLLGDHR IHNSNVKHSD CEACFKIHFV KEQRQYEVYK 240 FIEQHNHMLF NKEEMRFSRS KRQLHYAYHK NVFHGSSSKV GVTKFHRFRK AITGGVYCSG 300 GTVRDHENFK RDVAYFVDNK DAQMLLNMMS NRRKVCPEFF FEYKCDDKEL LAIFWADETA 360 RSNYREFGDA ISFDATFRTN KHAMIFVSFV AIDNHKKSVI VGAALIHNES VVDYTWISNN 420 LQHRTPFVSE FNKLVWNVHL GPDEFEMKWL NMMDLYGLRG DSWFDELYEI RESWIPAYYN 480 DYHMSGLMKT TSRSESVNAF FNVYAYFWHD LVIFLRSFDN AIESQRTTHG SLEVTTKSTV 540 PRLVSPCKLE AHAAEIYTQT IFFEVQKELR KAVWLCGWDG FTDIGETRVY TITHKNKASK 600 ITTKYTVVKN KIENSYDCSC NCFVRNGILC RHALKVMLND EVDRIPDKYI LHCWKRDLVP 660 VEWLPARFRY GEVDTDKERL MSVAYSYFER ILGRVRNEKH ILSKFVDQLQ EWDTKIDSEL 720 PIQSHAQETT TSIKEFLGVS QPENIDVLPP TGIRKQLRLQ MAKRRRESLN KVLI

Sequence ? help Back to Top

Protein Sequence Length: 774 aa Download sequence

MDYMSFNETF SKDIVEESSV FDSMNDCQGF DYGGENATAV NNETIEDQCN YSMRNEDGCN  60
DRNETLSEHN DGGVVDFVDI GVASLSNEAE GFITDLIARW KDGTKTNSLL LLTNYYRSDG  120
MGETNDGSKC WFPNVNAEYK PKVGDGFETV ESAEKMYRKY ANEAGFDVRL SNKKINNKGR  180
ITSRFYVCSK EGRPPSKYFD SLDVLLGDHR IHNSNVKHSD CEACFKIHFV KEQRQYEVYK  240
FIEQHNHMLF NKEEMRFSRS KRQLHYAYHK NVFHGSSSKV GVTKFHRFRK AITGGVYCSG  300
GTVRDHENFK RDVAYFVDNK DAQMLLNMMS NRRKVCPEFF FEYKCDDKEL LAIFWADETA  360
RSNYREFGDA ISFDATFRTN KHAMIFVSFV AIDNHKKSVI VGAALIHNES VVDYTWISNN  420
LQHRTPFVSE FNKLVWNVHL GPDEFEMKWL NMMDLYGLRG DSWFDELYEI RESWIPAYYN  480
DYHMSGLMKT TSRSESVNAF FNVYAYFWHD LVIFLRSFDN AIESQRTTHG SLEVTTKSTV  540
PRLVSPCKLE AHAAEIYTQT IFFEVQKELR KAVWLCGWDG FTDIGETRVY TITHKNKASK  600
ITTKYTVVKN KIENSYDCSC NCFVRNGILC RHALKVMLND EVDRIPDKYI LHCWKRDLVP  660
VEWLPARFRY GEVDTDKERL MSVAYSYFER ILGRVRNEKH ILSKFVDQLQ EWDTKIDSEL  720
PIQSHAQETT TSIKEFLGVS QPENIDVLPP TGIRKQLRLQ MAKRRRESLN KVLI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-53	FAR1 family protein