PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024982924.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WOX

Protein Properties

Length: 410aa MW: 45501.3 Da PI: 7.1624

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024982924.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.9	1.5e-17	57	117	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F++ +p ++e++++ ++l ++ +++V++WFqNr+ + k+ XP_024982924.1 57 KPRWNPKPEQIRILESIFNSgMVNPPRDEIRKIRTQLqeygQVGDANVFYWFQNRKSRSKH 117 89***************99***********************************995 PP
2	Wus_type_Homeobox	111.7	3.9e-36	56	118	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi+iLe++++sG+++P+++ei++i+++L+eyG+++d+NVfyWFQNrk+R+++k XP_024982924.1 56 PKPRWNPKPEQIRILESIFNSGMVNPPRDEIRKIRTQLQEYGQVGDANVFYWFQNRKSRSKHK 118 689**********************************************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MASSNRHWPS MFKSKPTCNT HHHHQWQSQD SNNNLLSSTC HRSPYSSGCE ERSPEPKPRW 60 NPKPEQIRIL ESIFNSGMVN PPRDEIRKIR TQLQEYGQVG DANVFYWFQN RKSRSKHKNR 120 HLQKSQNHQS LPVSATTTKG ATTSSSSSSE KSSSKSIEFL LNSPTDSVDQ QGHGYFGGGG 180 TGYHHQHHSE FLQEPFFFTT VQHPPPPPPA STTTASFTEG FCFSELGNVM NEDHNHGNLD 240 ETVGSGSAML LTDLMMMNHQ NGMPKNNNSK CVEEEKMMKL SSYNFTPPSA STSIVHLNPT 300 TTAVPSTVNI QGVEEPAPGK STVFINDVAF EVAVGPFNVR EAFGNDAVLV HSYGQPVVTN 360 EWGVTLHSLQ HGAVYYLVRS FSFDHSSAID LVYICFPSTS SSHTPPKFSS

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MASSNRHWPS MFKSKPTCNT HHHHQWQSQD SNNNLLSSTC HRSPYSSGCE ERSPEPKPRW  60
NPKPEQIRIL ESIFNSGMVN PPRDEIRKIR TQLQEYGQVG DANVFYWFQN RKSRSKHKNR  120
HLQKSQNHQS LPVSATTTKG ATTSSSSSSE KSSSKSIEFL LNSPTDSVDQ QGHGYFGGGG  180
TGYHHQHHSE FLQEPFFFTT VQHPPPPPPA STTTASFTEG FCFSELGNVM NEDHNHGNLD  240
ETVGSGSAML LTDLMMMNHQ NGMPKNNNSK CVEEEKMMKL SSYNFTPPSA STSIVHLNPT  300
TTAVPSTVNI QGVEEPAPGK STVFINDVAF EVAVGPFNVR EAFGNDAVLV HSYGQPVVTN  360
EWGVTLHSLQ HGAVYYLVRS FSFDHSSAID LVYICFPSTS SSHTPPKFSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	4e-59	WOX family protein