PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024982764.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

CAMTA

Protein Properties

Length: 976aa MW: 110792 Da PI: 7.0873

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024982764.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	159.2	8e-50	87	204	2	118
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 ++e k+rwl+++ei+a+L n++ ++++ ++ + p+sg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+ +t+ XP_024982764.1 87 MEEaKTRWLRPNEIHAVLYNHKYFNISVKPVNLPPSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNNERIHVYYAHGEDRTTLV 181 55669**************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhylevk 118 rrcywlL+++le+ivlvhy++++ XP_024982764.1 182 RRCYWLLDKKLEHIVLVHYRDTQ 204 ******************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 976 aa Download sequence
MLSFLPLYIR YKIRIGSSLI CRFCSFLLII WSAVSFWVVG YCRSIAVIDF ESRGSFSEME 60 PTLQAGLVGS EIHGFKTMKD LDIPNMMEEA KTRWLRPNEI HAVLYNHKYF NISVKPVNLP 120 PSGTIVLFDR KMLRNFRKDG HNWKKKKDGK TVKEAHEHLK VGNNERIHVY YAHGEDRTTL 180 VRRCYWLLDK KLEHIVLVHY RDTQELQGSP VTPVDSNSSS DLPTSSNQSE EIDGVDQVYF 240 TGVFSVFGDS TEPNETVINH KMRIHEINTL EWDELVIPND SNKLLTSEGG NALFDHPNQY 300 GLNGTIDDSN SSLGHKLAME NPLATFCHEG NSVGNNIDLL KVGMEDARVA NVATGVLDMM 360 GKEGLPSQDS FRRWMNYIIT DSPGAIDDPL LTPEPLLIGQ ESLGILSGDR HESHSNEQIF 420 SITEVSPAWA LSSEETKILV VGVFQEKYLH LLNSNLFCVC GDACVPAEIV QSGVFRCMIT 480 PQSPGIVNLF ISSDGHKPIS QLMAFEFQLP PTTSLMDSLD EKPDWQELQI KMRLSHLLFS 540 SSKSLTILSS KVPQKTQKEA IMFVQKSRHI VDSWDYLVNS ITEKRISFQR AKNSLMELTL 600 QNRLLEWLLE KVLEGGKIPD RDDQGQGVIH LCAILDYNWA IYPYSWSGLS LDFRDKSGWT 660 ALHWAAHYGR QRMVASLLSA GANPNLVTDP TSENTNGCTP ADLASKSGYE GLAAYLAEKS 720 LVAHFEAMTL AGNVSGSLQS TFPTNDDFAL NTPSAQINED EQYLKDTLAA YRTAADAAAR 780 IQAAFREQSF KLRTKEVESS STEDEARSII AAMRIQHAFR NHETKKQMAA AARIQHRFRT 840 WKIRKDFLNK RRQVIKIQAI FRGHQVRRQY TKIVWSVGVL EKAILRWRLK RRGFRGLQVD 900 PNNVEKDENQ ENNGMEGFFR ASRKQAEERV ERSVVRVQAM FRSKRAQEEY RKMKQEHLQA 960 SHEYDGSLDP ATDMEK

Sequence ? help Back to Top

Protein Sequence Length: 976 aa Download sequence

MLSFLPLYIR YKIRIGSSLI CRFCSFLLII WSAVSFWVVG YCRSIAVIDF ESRGSFSEME  60
PTLQAGLVGS EIHGFKTMKD LDIPNMMEEA KTRWLRPNEI HAVLYNHKYF NISVKPVNLP  120
PSGTIVLFDR KMLRNFRKDG HNWKKKKDGK TVKEAHEHLK VGNNERIHVY YAHGEDRTTL  180
VRRCYWLLDK KLEHIVLVHY RDTQELQGSP VTPVDSNSSS DLPTSSNQSE EIDGVDQVYF  240
TGVFSVFGDS TEPNETVINH KMRIHEINTL EWDELVIPND SNKLLTSEGG NALFDHPNQY  300
GLNGTIDDSN SSLGHKLAME NPLATFCHEG NSVGNNIDLL KVGMEDARVA NVATGVLDMM  360
GKEGLPSQDS FRRWMNYIIT DSPGAIDDPL LTPEPLLIGQ ESLGILSGDR HESHSNEQIF  420
SITEVSPAWA LSSEETKILV VGVFQEKYLH LLNSNLFCVC GDACVPAEIV QSGVFRCMIT  480
PQSPGIVNLF ISSDGHKPIS QLMAFEFQLP PTTSLMDSLD EKPDWQELQI KMRLSHLLFS  540
SSKSLTILSS KVPQKTQKEA IMFVQKSRHI VDSWDYLVNS ITEKRISFQR AKNSLMELTL  600
QNRLLEWLLE KVLEGGKIPD RDDQGQGVIH LCAILDYNWA IYPYSWSGLS LDFRDKSGWT  660
ALHWAAHYGR QRMVASLLSA GANPNLVTDP TSENTNGCTP ADLASKSGYE GLAAYLAEKS  720
LVAHFEAMTL AGNVSGSLQS TFPTNDDFAL NTPSAQINED EQYLKDTLAA YRTAADAAAR  780
IQAAFREQSF KLRTKEVESS STEDEARSII AAMRIQHAFR NHETKKQMAA AARIQHRFRT  840
WKIRKDFLNK RRQVIKIQAI FRGHQVRRQY TKIVWSVGVL EKAILRWRLK RRGFRGLQVD  900
PNNVEKDENQ ENNGMEGFFR ASRKQAEERV ERSVVRVQAM FRSKRAQEEY RKMKQEHLQA  960
SHEYDGSLDP ATDMEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16940.1	0.0	CAMTA family protein