PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024982429.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 754aa MW: 86445.7 Da PI: 7.2145

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024982429.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.9	1.3e-26	28	114	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk++ +gkw+++++ +eHnHel p XP_024982429.1 28 EFYKEYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRKPNGKWYIHSFIKEHNHELLP 114 6**************************************999877....9**********************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 754 aa Download sequence
MNVTAVSGVP NSEPQDNMEF DSNEAAYEFY KEYAKSVGFG TAKLSSRRSR ASKEFIDAKF 60 SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRKPNGKWY IHSFIKEHNH ELLPSQSHFF 120 RSHRNSDPLK NDAKVRRKTI LAAMSKQYGV YQCSGLENYI RNQNDRGRNL TLEEGDAQLL 180 LELFVTMQEE NPKFFYAVDL NEEHQLRNVF WVDAKGMDDY TNFSDAVSFD TTYFVNKYKL 240 PLVLFIGVNQ HCQPTLLGCA LISDETLFTF IWLFQTWYLA IGSRAPNVIL SDQSNSIETA 300 IAAVFPETRH CYGLWHVLEK VSRQLDYLNP WHDTFMAKFG KCIHKSWTDE EFDRRWAKLV 360 NKFNLGDDTW FQSLYQDRKL WAPTFIKNIS LAGLSTPSRS QSPTSFFDKY IHAETSLRDF 420 VEQYKVIMED RYEEQAKADF DAWHEAPELK SPSPFEKQLS IVYTHEIFKK FQVEVLGAAA 480 CHLKIEKEDG NSITYIVKDF ESSQDYMVEW NGTQLDICCS CRSFEFKGYL CRHAVVVLQM 540 SGVFTIPFKY VLQRWTNAAA SRYPISEKLE NVQTKTRRFN DLCRRAIILG EEGSISQESY 600 KIALSAIKDA LLQCSNANNS AENELRPSTS TSLGIYGTEE EDQGVATVSK EPVPNLNVNK 660 LNKGVKRTES GKEKSKYDNT AIVKEKVPAQ PEVVNIGIDA SFHQMELPNT RLLQFHNMMP 720 PHLHGVVPTM FQNVASTQFH NVASAQLQNS RLPH

Sequence ? help Back to Top

Protein Sequence Length: 754 aa Download sequence

MNVTAVSGVP NSEPQDNMEF DSNEAAYEFY KEYAKSVGFG TAKLSSRRSR ASKEFIDAKF  60
SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRKPNGKWY IHSFIKEHNH ELLPSQSHFF  120
RSHRNSDPLK NDAKVRRKTI LAAMSKQYGV YQCSGLENYI RNQNDRGRNL TLEEGDAQLL  180
LELFVTMQEE NPKFFYAVDL NEEHQLRNVF WVDAKGMDDY TNFSDAVSFD TTYFVNKYKL  240
PLVLFIGVNQ HCQPTLLGCA LISDETLFTF IWLFQTWYLA IGSRAPNVIL SDQSNSIETA  300
IAAVFPETRH CYGLWHVLEK VSRQLDYLNP WHDTFMAKFG KCIHKSWTDE EFDRRWAKLV  360
NKFNLGDDTW FQSLYQDRKL WAPTFIKNIS LAGLSTPSRS QSPTSFFDKY IHAETSLRDF  420
VEQYKVIMED RYEEQAKADF DAWHEAPELK SPSPFEKQLS IVYTHEIFKK FQVEVLGAAA  480
CHLKIEKEDG NSITYIVKDF ESSQDYMVEW NGTQLDICCS CRSFEFKGYL CRHAVVVLQM  540
SGVFTIPFKY VLQRWTNAAA SRYPISEKLE NVQTKTRRFN DLCRRAIILG EEGSISQESY  600
KIALSAIKDA LLQCSNANNS AENELRPSTS TSLGIYGTEE EDQGVATVSK EPVPNLNVNK  660
LNKGVKRTES GKEKSKYDNT AIVKEKVPAQ PEVVNIGIDA SFHQMELPNT RLLQFHNMMP  720
PHLHGVVPTM FQNVASTQFH NVASAQLQNS RLPH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	0.0	FAR1 family protein