PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024982388.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB_related

Protein Properties

Length: 502aa MW: 56430.6 Da PI: 8.0384

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024982388.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.5	1.5e-08	378	425	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 W+ E ++l+d+v+ +G g W+ I + + +Rt+ ++k++w+++l XP_024982388.1 378 WSVSEVKKLIDGVAHFGVGKWTHIKKLLFstsVHRTPVDLKDKWRNLL 425 **********************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence
MLYASSCRHV VSVAFALDDR GKQLVEEESL YHSLEEEAIV DCLLVEPRSD QVSVSGVWCF 60 DEDNHGKCIK TEDAPYKLGV PDSNLNAECV DTTKLNALDV LQHEVGVENL LAANGVSACD 120 DYLLDIGYVE HGSCIDYGSN EGLHVGNCSS ESRFPMFHDK GSYGIRSSLT ENIRGSKCDN 180 YFIGKTMCDM HHSYNCNCIF GSSSESKTVD RFGDFSKSFI YEENKEDNPP PRFAQNRMEV 240 STICRDVPDQ DHHGGVGSVT HKRSRKPTKR YIDESSNLDL RNCKKRREAS SVSKVKISKI 300 RRPKIQNEVE PKEKLPTSGI SFGKAIQVPF ISQGPTECQQ NNSPPMIENR MESYSSDDSE 360 TMMKSESGGN PRKHHRLWSV SEVKKLIDGV AHFGVGKWTH IKKLLFSTSV HRTPVDLKDK 420 WRNLLKASRA LNGSSRIEDE QKRSQPWRPL PKSILCRVRE LATVYPYPRE GNSKISKSKF 480 PLARHVSSPA RIKGNNNQVP VV

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence

MLYASSCRHV VSVAFALDDR GKQLVEEESL YHSLEEEAIV DCLLVEPRSD QVSVSGVWCF  60
DEDNHGKCIK TEDAPYKLGV PDSNLNAECV DTTKLNALDV LQHEVGVENL LAANGVSACD  120
DYLLDIGYVE HGSCIDYGSN EGLHVGNCSS ESRFPMFHDK GSYGIRSSLT ENIRGSKCDN  180
YFIGKTMCDM HHSYNCNCIF GSSSESKTVD RFGDFSKSFI YEENKEDNPP PRFAQNRMEV  240
STICRDVPDQ DHHGGVGSVT HKRSRKPTKR YIDESSNLDL RNCKKRREAS SVSKVKISKI  300
RRPKIQNEVE PKEKLPTSGI SFGKAIQVPF ISQGPTECQQ NNSPPMIENR MESYSSDDSE  360
TMMKSESGGN PRKHHRLWSV SEVKKLIDGV AHFGVGKWTH IKKLLFSTSV HRTPVDLKDK  420
WRNLLKASRA LNGSSRIEDE QKRSQPWRPL PKSILCRVRE LATVYPYPRE GNSKISKSKF  480
PLARHVSSPA RIKGNNNQVP VV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	284	314	KKRREASSVSKVKISKIRRPKIQNEVEPKEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	5e-24	MYB_related family protein