PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024982375.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 515aa MW: 56097.1 Da PI: 7.1789

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024982375.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	54.6	2.8e-17	133	221	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +W++ + +L++a+ ++ +l+rg+l++ +Weev++ + r ++ ++s +qCk+k +nl+kryk +++++ + ++ s++p+f+++e XP_024982375.1 133 EWSDTAIACLLDAYLDKFMQLNRGNLRGRDWEEVAAIVseRCEKQTKSVEQCKNKVDNLKKRYKLERHRMMNTnGGNAISHWPWFKKME 221 5***********************************777778899*************9999887763478889******8 PP

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence
MASSDDDFPL IGDTTTTTTS SHQTNPDFHH QLAATAHLLA SQATQINTPP PPRPTQEANG 60 EGYSDGGFCS QPMVVVPYDD ESDPNRSRIN GARSEKWSDR EELSDGGTPY NYSKKVKLAA 120 SSSGGEYRKD REEWSDTAIA CLLDAYLDKF MQLNRGNLRG RDWEEVAAIV SERCEKQTKS 180 VEQCKNKVDN LKKRYKLERH RMMNTNGGNA ISHWPWFKKM EQIVGNSLPL KAVLGEENSA 240 GGMSSPVRQS KRYATATSSP SCQITAIKSK PITNARWRRV VFKISGASLA GTSSHSVDPK 300 VAMLIAREVS MACNVGVEVA IVVGGRNFFC GDTWVTATGM DRSTAYQIGM MATVMNSILI 360 QSALEKLGVQ ARLQSAFSMP EVFEPYSKHR AIRHLEKGRV VIFGGIGAGT GNPLFSTDTA 420 AALRASEIHA DAFVKGTNAD GLFECDSISS VTFEHISFRE LASRSASPMD MMAATFCEEN 480 GIPVVIFNLH EPGNISRALS GEHVGTLIDH TGRVG

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence

MASSDDDFPL IGDTTTTTTS SHQTNPDFHH QLAATAHLLA SQATQINTPP PPRPTQEANG  60
EGYSDGGFCS QPMVVVPYDD ESDPNRSRIN GARSEKWSDR EELSDGGTPY NYSKKVKLAA  120
SSSGGEYRKD REEWSDTAIA CLLDAYLDKF MQLNRGNLRG RDWEEVAAIV SERCEKQTKS  180
VEQCKNKVDN LKKRYKLERH RMMNTNGGNA ISHWPWFKKM EQIVGNSLPL KAVLGEENSA  240
GGMSSPVRQS KRYATATSSP SCQITAIKSK PITNARWRRV VFKISGASLA GTSSHSVDPK  300
VAMLIAREVS MACNVGVEVA IVVGGRNFFC GDTWVTATGM DRSTAYQIGM MATVMNSILI  360
QSALEKLGVQ ARLQSAFSMP EVFEPYSKHR AIRHLEKGRV VIFGGIGAGT GNPLFSTDTA  420
AALRASEIHA DAFVKGTNAD GLFECDSISS VTFEHISFRE LASRSASPMD MMAATFCEEN  480
GIPVVIFNLH EPGNISRALS GEHVGTLIDH TGRVG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	0.0	Trihelix family protein