PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024982318.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | LBD | ||||||||
Protein Properties | Length: 239aa MW: 26559.4 Da PI: 6.2197 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.3 | 2.6e-38 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++Cv++pyf++eq +++fa++h++FGasnv+kll++lp + r +a+ +++yeA+ar++dP+yG+v++i++lqqq+ +l+++l XP_024982318.1 7 PCGACKFLRRKCVRGCVFSPYFCHEQgAAHFAAIHRVFGASNVSKLLAHLPVNGRCEAAITIAYEAQARIQDPIYGCVSHIFALQQQVVSLQSQL 101 7*************************89******************************************************************* PP DUF260 95 allkee 100 a+l+e+ XP_024982318.1 102 ASLREQ 107 *99987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence |
MTGSGSPCGA CKFLRRKCVR GCVFSPYFCH EQGAAHFAAI HRVFGASNVS KLLAHLPVNG 60 RCEAAITIAY EAQARIQDPI YGCVSHIFAL QQQVVSLQSQ LASLREQAAQ SLINGSSCSN 120 YVANDHRPNG RLPSYTPPQD IQSWLQESES SCRNVPQYDQ NSSTNNNVGN MNEIMNFNSI 180 KENNQNSLLK EEDGSFSSFQ EGSSYSIESL DMQMSYNKEW AFQENSEDLH SIAFGYIHH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 1e-54 | LBD family protein |