PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024982318.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family LBD
Protein Properties Length: 239aa    MW: 26559.4 Da    PI: 6.2197
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024982318.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.32.6e-3871071100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++Cv++pyf++eq +++fa++h++FGasnv+kll++lp + r +a+ +++yeA+ar++dP+yG+v++i++lqqq+ +l+++l
  XP_024982318.1   7 PCGACKFLRRKCVRGCVFSPYFCHEQgAAHFAAIHRVFGASNVSKLLAHLPVNGRCEAAITIAYEAQARIQDPIYGCVSHIFALQQQVVSLQSQL 101
                     7*************************89******************************************************************* PP

          DUF260  95 allkee 100
                     a+l+e+
  XP_024982318.1 102 ASLREQ 107
                     *99987 PP

Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MTGSGSPCGA CKFLRRKCVR GCVFSPYFCH EQGAAHFAAI HRVFGASNVS KLLAHLPVNG  60
RCEAAITIAY EAQARIQDPI YGCVSHIFAL QQQVVSLQSQ LASLREQAAQ SLINGSSCSN  120
YVANDHRPNG RLPSYTPPQD IQSWLQESES SCRNVPQYDQ NSSTNNNVGN MNEIMNFNSI  180
KENNQNSLLK EEDGSFSSFQ EGSSYSIESL DMQMSYNKEW AFQENSEDLH SIAFGYIHH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.11e-54LBD family protein