PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024982314.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 415aa MW: 46292.2 Da PI: 6.6324

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024982314.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.2	1.2e-12	349	394	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +Av+YIk+Lq XP_024982314.1 349 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKELQ 394 689*******************7....688***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MDSDLHRQHQ QQQQKQLQQQ QPPEQIMNSG LTRYRSAPSS YFSNLINSGT YEGEDIDPFF 60 NPRVSSPETE RILSRFMSSD GGGDNSSAHQ NLGQIRGNEP QFMDSMKQEQ VTISSQQQRQ 120 MMYQNHAQSQ QVVHNNNPVV SGSGSTVVDP LMAMDPPTSL LRQSSSPAGF FENINIDDGY 180 SMMRSMDKFQ AANDSVPDSS FSSAKRLKSR MTFSSGAHSS SRLLSRIPEN EDKAMGMSAH 240 NNGSFGDTHP KTAGYVTTFP GGSWDEPTML TDGFLKELGE NDQNSLSSLS SSGNRNDEGR 300 IHAPTGLTHQ LSLPTSSAEL SVMEKLLQFQ DSVPLRSRAK RGCATHPRSI AERVRRTRIS 360 ERMRKLQELV PNMDKQTNTA DMLDLAVDYI KELQKQVETL SDHHSKCTCP HKQEL

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MDSDLHRQHQ QQQQKQLQQQ QPPEQIMNSG LTRYRSAPSS YFSNLINSGT YEGEDIDPFF  60
NPRVSSPETE RILSRFMSSD GGGDNSSAHQ NLGQIRGNEP QFMDSMKQEQ VTISSQQQRQ  120
MMYQNHAQSQ QVVHNNNPVV SGSGSTVVDP LMAMDPPTSL LRQSSSPAGF FENINIDDGY  180
SMMRSMDKFQ AANDSVPDSS FSSAKRLKSR MTFSSGAHSS SRLLSRIPEN EDKAMGMSAH  240
NNGSFGDTHP KTAGYVTTFP GGSWDEPTML TDGFLKELGE NDQNSLSSLS SSGNRNDEGR  300
IHAPTGLTHQ LSLPTSSAEL SVMEKLLQFQ DSVPLRSRAK RGCATHPRSI AERVRRTRIS  360
ERMRKLQELV PNMDKQTNTA DMLDLAVDYI KELQKQVETL SDHHSKCTCP HKQEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51140.1	1e-57	bHLH family protein