PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024982230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 232aa MW: 26412.5 Da PI: 9.8681 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.5 | 6.2e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien s rqvtfskRr+g++KKA+EL +LCdaev viifsstgkly ++s XP_024982230.1 9 KKIENVSSRQVTFSKRRAGLMKKAKELAILCDAEVGVIIFSSTGKLYGFAS 59 68*********************************************9986 PP | |||||||
2 | K-box | 65.4 | 2.1e-22 | 80 | 170 | 10 | 100 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +++k+ + + el+ Lk+ei +L++ qR ++G++Le Ls+keL++Le+qL++++ ++++K+ lle+ie+++ +e+++ +en+aL+k++ e XP_024982230.1 80 TSEKQHEVDPELEALKAEIVKLRKGQRLMIGKELEGLSYKELEHLERQLHDGMLAVKNRKDMALLEEIEQTKLREQKTMQENEALKKQITE 170 5666778999******************************************************************************975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence |
MGRGRIEIKK IENVSSRQVT FSKRRAGLMK KAKELAILCD AEVGVIIFSS TGKLYGFASS 60 RLQNIISRYE RNSDCLDNPT SEKQHEVDPE LEALKAEIVK LRKGQRLMIG KELEGLSYKE 120 LEHLERQLHD GMLAVKNRKD MALLEEIEQT KLREQKTMQE NEALKKQITE HLNKSTTNPE 180 IRLVGRKSPF ISPSPVAYLR SDNGDVGISL HLGLSPREDH PKKKVPKIEF DP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57390.1 | 4e-49 | MIKC_MADS family protein |