PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024982210.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

AP2

Protein Properties

Length: 495aa MW: 54840 Da PI: 7.6915

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024982210.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.4	1.1e-15	175	224	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d r k+ +lg f+t Aa+a+++a+ k++g XP_024982210.1 175 SQYRGVTFYRRTGRWESHIWD------RgKQLYLGGFDTSHAAARAYDRAAIKFRG 224 78*****************......55***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence
MLDLNVDVVV INKNCDRSSF DTNGCIAVNK NVHEDRQSEI HSGTSVSSDV LNTDEDNPLV 60 TDDVVDDEDS VSYSAFDKRS FRNDIFSQTG ESRENSNRVS VGLITRQFFP VVSYLELEEE 120 LGSPLIKASP SATSVLGLDW LNLKVPEAAP MPQNMQPLPP QKARKSRRGP PSKSSQYRGV 180 TFYRRTGRWE SHIWDRGKQL YLGGFDTSHA AARAYDRAAI KFRGNDADIN FDISDYEEDM 240 TQVKNLSKEE FIHILRRQSN GFSRGSSRYR GVTLHKCGRW EARMGQLLGK KAYDKAAIKC 300 NGREAVTNFE PSTYSTDINL EERDEANGHN LDLNLGVSPT TAGPERNHKV QNVDVGFTAC 360 ELSSGKRQKV GGLAPTSIGG RSHTAVPHHY PAWPSMYSGH PPNYEDMGRG KGSAGVVPSA 420 DAAWQMQMQM ATSHHVVVPF PVASTAASSG FSSFTNFTDP LFLSTKNMQQ QQQQKKKNKI 480 TSFNPMPPAA TSSQY

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence

MLDLNVDVVV INKNCDRSSF DTNGCIAVNK NVHEDRQSEI HSGTSVSSDV LNTDEDNPLV  60
TDDVVDDEDS VSYSAFDKRS FRNDIFSQTG ESRENSNRVS VGLITRQFFP VVSYLELEEE  120
LGSPLIKASP SATSVLGLDW LNLKVPEAAP MPQNMQPLPP QKARKSRRGP PSKSSQYRGV  180
TFYRRTGRWE SHIWDRGKQL YLGGFDTSHA AARAYDRAAI KFRGNDADIN FDISDYEEDM  240
TQVKNLSKEE FIHILRRQSN GFSRGSSRYR GVTLHKCGRW EARMGQLLGK KAYDKAAIKC  300
NGREAVTNFE PSTYSTDINL EERDEANGHN LDLNLGVSPT TAGPERNHKV QNVDVGFTAC  360
ELSSGKRQKV GGLAPTSIGG RSHTAVPHHY PAWPSMYSGH PPNYEDMGRG KGSAGVVPSA  420
DAAWQMQMQM ATSHHVVVPF PVASTAASSG FSSFTNFTDP LFLSTKNMQQ QQQQKKKNKI  480
TSFNPMPPAA TSSQY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.2	2e-82	AP2 family protein