PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024982083.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | CO-like | ||||||||
Protein Properties | Length: 389aa MW: 43338.9 Da PI: 6.1587 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.3 | 1.3e-07 | 26 | 68 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 r C+ +++ ++l+C+ + lC +C e H+ Ht++ XP_024982083.1 26 RPCDFCNKSTAILYCRADTAKLCLSCDREVHSTnqlftkHTRS 68 68******99*********************668888888875 PP | |||||||
2 | zf-B_box | 26.7 | 1.2e-08 | 69 | 114 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg........Htvvp 41 C+ +++ ++++fC ++ C++C e+H+ H+++p XP_024982083.1 69 LLCDACDSSPASIFCSTDAAVHCQNCDWETHNKtnsnspttHDRRP 114 57*****************************778888888888777 PP | |||||||
3 | CCT | 59.4 | 1.3e-20 | 345 | 386 | 1 | 42 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvk 42 Re a++RYkeK+k+R+++K+irYesRK++AesR R++GrF+k XP_024982083.1 345 RETAISRYKEKKKSRRYDKHIRYESRKVRAESRTRIRGRFAK 386 99***************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence |
MPGSPPIDHS HGETKTTGIY GSSLRRPCDF CNKSTAILYC RADTAKLCLS CDREVHSTNQ 60 LFTKHTRSLL CDACDSSPAS IFCSTDAAVH CQNCDWETHN KTNSNSPTTH DRRPLEGFTG 120 CPSVTDLLSI LGFEDLSKKG VFLGGDGGSD SHGSGDGFPD YLVWDTPSFV SLDDLIVSSG 180 SDHNYQAMGV PPLPKNRNAA LGTYKDELLR QLRELAIFEP NVDDGQDMVK PMSEFQPTVT 240 TESIQIEGRS SGFEHKLEQK IYSPYEANTF QWCHDGSDAG GQEFVSDQLV GDNETNCVVP 300 DENLYSVHSS SHANANHEGR LHDHNVAAEN VPLFPVVRDI NSQERETAIS RYKEKKKSRR 360 YDKHIRYESR KVRAESRTRI RGRFAKLDR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47890.1 | 2e-81 | CO-like family protein |