PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024982082.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

CO-like

Protein Properties

Length: 389aa MW: 43338.9 Da PI: 6.1587

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024982082.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.3	1.3e-07	26	68	4	40
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 r C+ +++ ++l+C+ + lC +C e H+ Ht++ XP_024982082.1 26 RPCDFCNKSTAILYCRADTAKLCLSCDREVHSTnqlftkHTRS 68 68****99*******************668888888875 PP
2	zf-B_box	26.7	1.2e-08	69	114	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg........Htvvp 41 C+ +++ ++++fC ++ C++C e+H+ H+++p XP_024982082.1 69 LLCDACDSSPASIFCSTDAAVHCQNCDWETHNKtnsnspttHDRRP 114 57*****************************778888888888777 PP
3	CCT	59.4	1.3e-20	345	386	1	42
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvk 42 Re a++RYkeK+k+R+++K+irYesRK++AesR R++GrF+k XP_024982082.1 345 RETAISRYKEKKKSRRYDKHIRYESRKVRAESRTRIRGRFAK 386 99***************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MPGSPPIDHS HGETKTTGIY GSSLRRPCDF CNKSTAILYC RADTAKLCLS CDREVHSTNQ 60 LFTKHTRSLL CDACDSSPAS IFCSTDAAVH CQNCDWETHN KTNSNSPTTH DRRPLEGFTG 120 CPSVTDLLSI LGFEDLSKKG VFLGGDGGSD SHGSGDGFPD YLVWDTPSFV SLDDLIVSSG 180 SDHNYQAMGV PPLPKNRNAA LGTYKDELLR QLRELAIFEP NVDDGQDMVK PMSEFQPTVT 240 TESIQIEGRS SGFEHKLEQK IYSPYEANTF QWCHDGSDAG GQEFVSDQLV GDNETNCVVP 300 DENLYSVHSS SHANANHEGR LHDHNVAAEN VPLFPVVRDI NSQERETAIS RYKEKKKSRR 360 YDKHIRYESR KVRAESRTRI RGRFAKLDR

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MPGSPPIDHS HGETKTTGIY GSSLRRPCDF CNKSTAILYC RADTAKLCLS CDREVHSTNQ  60
LFTKHTRSLL CDACDSSPAS IFCSTDAAVH CQNCDWETHN KTNSNSPTTH DRRPLEGFTG  120
CPSVTDLLSI LGFEDLSKKG VFLGGDGGSD SHGSGDGFPD YLVWDTPSFV SLDDLIVSSG  180
SDHNYQAMGV PPLPKNRNAA LGTYKDELLR QLRELAIFEP NVDDGQDMVK PMSEFQPTVT  240
TESIQIEGRS SGFEHKLEQK IYSPYEANTF QWCHDGSDAG GQEFVSDQLV GDNETNCVVP  300
DENLYSVHSS SHANANHEGR LHDHNVAAEN VPLFPVVRDI NSQERETAIS RYKEKKKSRR  360
YDKHIRYESR KVRAESRTRI RGRFAKLDR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47890.1	2e-81	CO-like family protein