PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024982073.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HSF

Protein Properties

Length: 342aa MW: 39287.3 Da PI: 5.5274

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024982073.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	114.7	5.8e-36	61	153	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+ye+++d+++++++sws+ g+sfvv+d++ f++++Lp+yFkh+nf+SF+RQLn+YgF+k++ + weF+++ F kg+++ l++ XP_024982073.1 61 FLTKVYEMVDDPNFDHILSWSRGGQSFVVWDTQAFSTNLLPRYFKHNNFSSFIRQLNTYGFRKIDPDI---------WEFANEAFLKGQRHILKN 146 9*************************************************************9876.........************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 ikr+k++ XP_024982073.1 147 IKRRKTS 153 **986 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MDPFYSVVKE EYPLGGSSST VGGSGSTVPE KQPVVVEVPQ IMVMQVPQPM EGLHDSGPPP 60 FLTKVYEMVD DPNFDHILSW SRGGQSFVVW DTQAFSTNLL PRYFKHNNFS SFIRQLNTYG 120 FRKIDPDIWE FANEAFLKGQ RHILKNIKRR KTSSHPPPQQ EANNLCVEVG TFGLDGEVER 180 LRRDKRVLMT ELVKLRQQQQ NTRSHLKEME LRLKGTEKKR QKMMGFLAKA LQNPEFIQKL 240 ASHGERKNLA EAFMKERRKR PIDHGSNRVN IMESSETSNE FGDLSELEEL ALEMQGVGRL 300 KRSQEEEAKD LSGVQEFDEE FWEELFSERF DIAGSEDGEA DS

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MDPFYSVVKE EYPLGGSSST VGGSGSTVPE KQPVVVEVPQ IMVMQVPQPM EGLHDSGPPP  60
FLTKVYEMVD DPNFDHILSW SRGGQSFVVW DTQAFSTNLL PRYFKHNNFS SFIRQLNTYG  120
FRKIDPDIWE FANEAFLKGQ RHILKNIKRR KTSSHPPPQQ EANNLCVEVG TFGLDGEVER  180
LRRDKRVLMT ELVKLRQQQQ NTRSHLKEME LRLKGTEKKR QKMMGFLAKA LQNPEFIQKL  240
ASHGERKNLA EAFMKERRKR PIDHGSNRVN IMESSETSNE FGDLSELEEL ALEMQGVGRL  300
KRSQEEEAKD LSGVQEFDEE FWEELFSERF DIAGSEDGEA DS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	144	150	LKNIKRR
2	182	222	RRDKRVLMTELVKLRQQQQNTRSHLKEMELRLKGTEKKRQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	1e-104	HSF family protein