PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024981991.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 343aa MW: 36861.7 Da PI: 8.7611

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024981991.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.1	0.0012	130	152	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H XP_024981991.1 130 YECKTCSRTFPSFQALGGHRASH 152 99**********99999998887 PP
2	zf-C2H2	14.8	8.5e-05	214	236	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ F++ L H+r+H XP_024981991.1 214 HECSICGTEFNSGQALGGHMRRH 236 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MEAAVEQTTT VAAAGADDAD GGAGGPKDIT NIAKGKRTKR QRPQSPILFT FSSTNNNDDH 60 RLTYSPASSS GFPAGSTTTE DEDTARSLIL LSKGQSSKKN KDDNYDGMFK FNSKKYIQTP 120 ATGNAGVFVY ECKTCSRTFP SFQALGGHRA SHKKPKNNED IRKPPPYTVV PDNNEPPSPE 180 FSLRNTNFSS SFSLQLNNRV SLIGNTSKPS SKLHECSICG TEFNSGQALG GHMRRHRVAG 240 GGNKGGNSNG TNTTTLSLIP FSPVTTAEVY DDDQKSKNID DALCLGLGLD LNLPAPREAT 300 TAAADYDQRK NRSFTFSPTG ENEKKPQPAV RLSAAPTLVD CHY

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MEAAVEQTTT VAAAGADDAD GGAGGPKDIT NIAKGKRTKR QRPQSPILFT FSSTNNNDDH  60
RLTYSPASSS GFPAGSTTTE DEDTARSLIL LSKGQSSKKN KDDNYDGMFK FNSKKYIQTP  120
ATGNAGVFVY ECKTCSRTFP SFQALGGHRA SHKKPKNNED IRKPPPYTVV PDNNEPPSPE  180
FSLRNTNFSS SFSLQLNNRV SLIGNTSKPS SKLHECSICG TEFNSGQALG GHMRRHRVAG  240
GGNKGGNSNG TNTTTLSLIP FSPVTTAEVY DDDQKSKNID DALCLGLGLD LNLPAPREAT  300
TAAADYDQRK NRSFTFSPTG ENEKKPQPAV RLSAAPTLVD CHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	1e-43	C2H2 family protein