PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024981962.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family B3
Protein Properties Length: 357aa    MW: 40189.1 Da    PI: 10.1738
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024981962.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.61.9e-17138225196
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k +++s+v +  +l lp +f+++h    ++++ ++le+e+g++++  +i +++     l++GW+ F+ +++L++gD +vF+l++ ++f  ++ 
  XP_024981962.1 138 FVKSMVRSHVYSCFWLGLPTSFCKKHLP--KSTVSMVLENEDGNEYDAVFISERT----GLSGGWRAFALEHKLDDGDALVFELVEPTRF--KIY 224
                     89************************53..36789***************54444....4***********************9986777..554 PP

                     E CS
              B3  96 v 96 
                     +
  XP_024981962.1 225 I 225
                     4 PP
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    
MAEEITSNSY EEARKQQLLE NKKRFEDLGI LKISKSLSDL SKSEKQSKQR EVKPKIRNAL  60
VIEPRRSTRA RNPAPSYQDD LDIGLPSVRR RSNSNSSWAS YLARPLEEVK TASYEERVQA  120
IRSAEKVQSN LQSEYPSFVK SMVRSHVYSC FWLGLPTSFC KKHLPKSTVS MVLENEDGNE  180
YDAVFISERT GLSGGWRAFA LEHKLDDGDA LVFELVEPTR FKIYIVKAAS DDNMSNVEKE  240
AAETKETSSA SKKRKKTLDS SAENGKKLKD VEEEAAETKE TSTASKKRKK TLDSSAENGK  300
EAAETKEIST APKRRKATLE SSTEKKGEKP KAGSHQTKKP KENVTATRRS TRKRNGQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1252256KKRKK
2252290KKRKKTLDSSAENGKKLKDVEEEAAETKETSTASKKRKK
3253291KKRKKTLDSSAENGKKLKDVEEEAAETKETSTASKKRKK
4253269KRKKTLDSSAENGKKLK
5286290KKRKK
6286324KKRKKTLDSSAENGKKLKDVEEEAAETKETSTASKKRKK
7287325KKRKKTLDSSAENGKKLKDVEEEAAETKETSTASKKRKK
8313341KRRKATLESSTEKKGEKPKAGSHQTKKPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.16e-71B3 family protein