PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024981956.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | C2H2 | ||||||||
Protein Properties | Length: 381aa MW: 42974.6 Da PI: 7.279 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16 | 3.4e-05 | 220 | 239 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ XP_024981956.1 220 FSCPVCFKTFNRYNNMQMHM 239 89*****************9 PP | |||||||
2 | zf-C2H2 | 14.4 | 0.00011 | 304 | 326 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ XP_024981956.1 304 FMCRKCGKAFAVRGDWRTHEKNC 326 89*****************9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence |
MTDPSYSSNL YSQWFRIDQF SNSCPTNLPH HVQTSIHYQY PRSYYYNNFQ SSSYSNTRTT 60 NSFNIHPSSS VINQHPTAPP SPPLREALPL LSLSPSRKHE DYYHHQQQPS CSTTTHQDMD 120 VEGDDVEEED DETAVTVALH IGLPNASAAD LASLISNSSN SSSTTTTTTT EIMVPSNINN 180 KSKDGDGDEG CLGYSPISRL NKGQYWIPTP SQILIGPTQF SCPVCFKTFN RYNNMQMHMW 240 GHGSQYRKGP ESLRGTQPTG MLKLPCYCCA PGCRNNIDHP RSRPLKDFRT LQTHYKRKHG 300 IKPFMCRKCG KAFAVRGDWR THEKNCGKLW YCICGSDFKH KRSLKDHIKA FGHGHAAYGI 360 NGFEEDDEPA SEIEQDDDGN S |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 1e-139 | C2H2 family protein |