PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024981926.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

SBP

Protein Properties

Length: 346aa MW: 36812.8 Da PI: 8.3205

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024981926.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	135.8	1.4e-42	80	156	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC+ dls+ak+y++rhkvC vhsk+++v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk++ XP_024981926.1 80 RCQVEGCNLDLSDAKTYYSRHKVCGVHSKTAKVIVNGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPT 156 6**************************************************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MEMSGSSSSS KSQLLKIGLK FGEEIYFEDV GVGAETKSQG GLSPVGSGGD GGGGGGPPKK 60 GRTGSSGGQV GLGQGQQPPR CQVEGCNLDL SDAKTYYSRH KVCGVHSKTA KVIVNGLEQR 120 FCQQCSRFHQ LPEFDQGKRS CRRRLAGHNE RRRKPTSGSL LSTRYGSLPS SIFENNGNGG 180 SFLMDFSSCP RAPPRAASVQ WPTTRTPPRA TNDLPITTEK LPPLPWQSSL DNPPPYINPN 240 VPPGGCFNGV QDSNCALSLL SNHSSGSTNQ TLSLEYYLNP DAGAPMVQPV HGHFSTANTT 300 AWGYDTNEAH LGLGQIPQSG YSGELGLGQQ GGRRYDSSAD HIDWSL

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MEMSGSSSSS KSQLLKIGLK FGEEIYFEDV GVGAETKSQG GLSPVGSGGD GGGGGGPPKK  60
GRTGSSGGQV GLGQGQQPPR CQVEGCNLDL SDAKTYYSRH KVCGVHSKTA KVIVNGLEQR  120
FCQQCSRFHQ LPEFDQGKRS CRRRLAGHNE RRRKPTSGSL LSTRYGSLPS SIFENNGNGG  180
SFLMDFSSCP RAPPRAASVQ WPTTRTPPRA TNDLPITTEK LPPLPWQSSL DNPPPYINPN  240
VPPGGCFNGV QDSNCALSLL SNHSSGSTNQ TLSLEYYLNP DAGAPMVQPV HGHFSTANTT  300
AWGYDTNEAH LGLGQIPQSG YSGELGLGQQ GGRRYDSSAD HIDWSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	3e-53	SBP family protein