PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024981890.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 384aa MW: 41241.6 Da PI: 6.7458

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024981890.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.1	1.7e-17	57	102	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v +G ++W++Iar ++ gR++k+c++rw + XP_024981890.1 57 KGPWSPEEDAILSRLVSNFGARNWSLIARGIP-GRSGKSCRLRWCNQ 102 79****************************.*********985 PP
2	Myb_DNA-binding	56.6	5.9e-18	109	153	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd +++ a++ +G++ W++Iar ++ gRt++ +k++w++ XP_024981890.1 109 RKPFTDEEDRIILSAHAIHGNK-WASIARLLP-GRTDNAIKNHWNST 153 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MEDFSTGQHD SGDVTTAAAE NHDADDCDAV VVGDGIGCSS ASGGGGRAGK KSGDRVKGPW 60 SPEEDAILSR LVSNFGARNW SLIARGIPGR SGKSCRLRWC NQLDPAVKRK PFTDEEDRII 120 LSAHAIHGNK WASIARLLPG RTDNAIKNHW NSTLRRRGLE HGKFNLGSGN TMEEASVERS 180 KASSEETLSC GDVNSSKIFE GVDVTSDHNA ENAQTKPHFN NVPNDQPTLF RPKARVSAFN 240 VYNSLDSPET QGTSIHSSKA DVGLSKLLEG AYNERLVPHR CGHGCCDTST IPISHKSLLG 300 PEFVDYVEPP SFPSHELAAL ATDISNIAWL RSGLENSSVR PTDNASGRAN PKAKDHFRLV 360 TDVLSPMPIS WQPSAQPANV GSSG

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MEDFSTGQHD SGDVTTAAAE NHDADDCDAV VVGDGIGCSS ASGGGGRAGK KSGDRVKGPW  60
SPEEDAILSR LVSNFGARNW SLIARGIPGR SGKSCRLRWC NQLDPAVKRK PFTDEEDRII  120
LSAHAIHGNK WASIARLLPG RTDNAIKNHW NSTLRRRGLE HGKFNLGSGN TMEEASVERS  180
KASSEETLSC GDVNSSKIFE GVDVTSDHNA ENAQTKPHFN NVPNDQPTLF RPKARVSAFN  240
VYNSLDSPET QGTSIHSSKA DVGLSKLLEG AYNERLVPHR CGHGCCDTST IPISHKSLLG  300
PEFVDYVEPP SFPSHELAAL ATDISNIAWL RSGLENSSVR PTDNASGRAN PKAKDHFRLV  360
TDVLSPMPIS WQPSAQPANV GSSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	1e-106	MYB family protein