PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024981837.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 484aa MW: 54358.4 Da PI: 6.8004

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024981837.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.3	5.7e-13	344	390	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq XP_024981837.1 344 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYITDLQ 390 799*********************66......***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence
MGEKLGFEEE DKAILESVLG REAFDFFIWS ASNKIPDEFR SKTADLGVQE GLRKILDKSD 60 WNYAIFWQVS NSKSGKSALI WGDGYCGESK EGEIGHKKRD EFSRKKRVLQ KLHLCFKGSE 120 ENLAAKMDSV SDLEMYYLTS MYYLFPFDKP SSPSQSFNTS RSVWVSDSRS CEEHYQSRAF 180 LAKLARFQTL VLVPVKRGVL ELGSFKSILE EQSLVAMVKT LFNGCHPKVL PKIFGHELSL 240 GSGGAKSGPI SINFSPKVEE DLDFGAESYE PNHVFGGNSS NGHRLDDNNE GKLFPQMNHV 300 IGGVLNSQSI VSALDQSNQD SSMMDRKPRK RGRKPANGRE EPLNHVEAER QRREKLNQRF 360 YALRAVVPNI SKMDKASLLG DAISYITDLQ SKIRILEAEK DVVSIPEVDF MARKDDAVVR 420 VSCALDDHPV SRVIKTFREH QMVMQDTNVS TTEDGKVIHT FSFQARGGAA AEELKEKLDA 480 AFSD

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence

MGEKLGFEEE DKAILESVLG REAFDFFIWS ASNKIPDEFR SKTADLGVQE GLRKILDKSD  60
WNYAIFWQVS NSKSGKSALI WGDGYCGESK EGEIGHKKRD EFSRKKRVLQ KLHLCFKGSE  120
ENLAAKMDSV SDLEMYYLTS MYYLFPFDKP SSPSQSFNTS RSVWVSDSRS CEEHYQSRAF  180
LAKLARFQTL VLVPVKRGVL ELGSFKSILE EQSLVAMVKT LFNGCHPKVL PKIFGHELSL  240
GSGGAKSGPI SINFSPKVEE DLDFGAESYE PNHVFGGNSS NGHRLDDNNE GKLFPQMNHV  300
IGGVLNSQSI VSALDQSNQD SSMMDRKPRK RGRKPANGRE EPLNHVEAER QRREKLNQRF  360
YALRAVVPNI SKMDKASLLG DAISYITDLQ SKIRILEAEK DVVSIPEVDF MARKDDAVVR  420
VSCALDDHPV SRVIKTFREH QMVMQDTNVS TTEDGKVIHT FSFQARGGAA AEELKEKLDA  480
AFSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	326	334	RKPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16430.1	1e-143	bHLH family protein