PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024981535.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 331aa    MW: 36767.1 Da    PI: 7.6211
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024981535.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-12266311655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el+P+     +k  + +++L +Av+YIk+Lq
  XP_024981535.1 266 SIAERVRRTRISERMRKLQELVPHM----DKQTNTSDMLDLAVDYIKDLQ 311
                     689*********************7....688*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    
MNFDMSNQNN NGLLRFRSAP SSVLQSFVND IEKTRDVNDG LNYNLISQSF QDLQEEVDLK  60
PNLMTGFSLN SQLPYNRGLS SSMAMASDNL GHQSKMGSSL LRQNSSPAGL FSNLNHPNGY  120
GGIRGSVGSY RLGNVGNNGD LSPSSSRLKR QLSSSSGVTS LGMLPRISEV EPDTIDPGVL  180
NDSPDYPFGS WEHEPSQFID NFTDLKRDLD HQNGENLGNH PPMLSHHLSL PKTSGEIAAV  240
EKLLHFQDSV PCKIRAKRGC ATHPRSIAER VRRTRISERM RKLQELVPHM DKQTNTSDML  300
DLAVDYIKDL QEQYKTLKDC RANCRCSVKS G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.15e-84bHLH family protein