PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024981194.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Protein Properties

Length: 717aa MW: 80006.4 Da PI: 8.2068

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024981194.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.9	8.9e-19	197	296	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +Lk+gD+v+F++++ e++ XP_024981194.1 197 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWLFQFRFwpNNNSRMYVLE-GVTPCIQSMQLKAGDTVTFSRME-PEGK 289 99************************555567778***********99899999999.*******************876.7888 PP .EEEEE- CS B3 92 lvvkvfr 98 l++++++ XP_024981194.1 290 LLMGFRK 296 8888776 PP

Sequence ? help Back to Top
Protein Sequence Length: 717 aa Download sequence
MRSSSIKMLK QCGDGTGDDG QKYFLPSDND DASTSQMKQE ESLPPKGEMQ TMSPSISTFN 60 GTSESAHGTK VIKYKESTGV KDAYGSLVQT DLTIGLASSR NPVFLPSMAV EERELNKSYS 120 SFQHGPWSRH VLPKVPKSIL AQGYDGNASM NSQIRVARPP VEGRIKNQLL PRYWPRITEQ 180 ELQQISGDSN ATVVPLFEKV LSASDAGRIG RLVLPKACAE AYFPPISQPE GLPLRIQDVK 240 GKEWLFQFRF WPNNNSRMYV LEGVTPCIQS MQLKAGDTVT FSRMEPEGKL LMGFRKAPIS 300 ASMQDSRIAA IHSGVFPSEP SLSGVNTIGN LSHMSDYSGL LQSLKRNTDS HLNALSTNTN 360 SPIGDASRHA NEKLGSKSSV DSFQPDKKRS RNINSKSKRL LIESQDALEL KYTWEELQDM 420 LSPPTALKPS TITIEDHEFE EYEEPPVFGK VSIFTARLSG EQEQWAQCNN CSKWRRLPVN 480 FLLPAKWTCQ ENVWDQSRSV CLAPDELSPR ELEYLLGLAK EFQRLRRPDQ AQGVTGHNLT 540 EPSIAATTKH PRHRPGCSCI VCSQPPSGKG KHKPNCTCNV CMTVKRRFKT LMLRKQQRQS 600 EREAEIAEKN QLKLETEMET GFAELRSSGK GQLDLNIHPR RLQDNHAKNH VSMMSLLQAA 660 NQPLETYMKQ KGLTSLISEP QASSVTQPLP QDTPTVQADA QCNEEERQGL DENQNSS

Sequence ? help Back to Top

Protein Sequence Length: 717 aa Download sequence

MRSSSIKMLK QCGDGTGDDG QKYFLPSDND DASTSQMKQE ESLPPKGEMQ TMSPSISTFN  60
GTSESAHGTK VIKYKESTGV KDAYGSLVQT DLTIGLASSR NPVFLPSMAV EERELNKSYS  120
SFQHGPWSRH VLPKVPKSIL AQGYDGNASM NSQIRVARPP VEGRIKNQLL PRYWPRITEQ  180
ELQQISGDSN ATVVPLFEKV LSASDAGRIG RLVLPKACAE AYFPPISQPE GLPLRIQDVK  240
GKEWLFQFRF WPNNNSRMYV LEGVTPCIQS MQLKAGDTVT FSRMEPEGKL LMGFRKAPIS  300
ASMQDSRIAA IHSGVFPSEP SLSGVNTIGN LSHMSDYSGL LQSLKRNTDS HLNALSTNTN  360
SPIGDASRHA NEKLGSKSSV DSFQPDKKRS RNINSKSKRL LIESQDALEL KYTWEELQDM  420
LSPPTALKPS TITIEDHEFE EYEEPPVFGK VSIFTARLSG EQEQWAQCNN CSKWRRLPVN  480
FLLPAKWTCQ ENVWDQSRSV CLAPDELSPR ELEYLLGLAK EFQRLRRPDQ AQGVTGHNLT  540
EPSIAATTKH PRHRPGCSCI VCSQPPSGKG KHKPNCTCNV CMTVKRRFKT LMLRKQQRQS  600
EREAEIAEKN QLKLETEMET GFAELRSSGK GQLDLNIHPR RLQDNHAKNH VSMMSLLQAA  660
NQPLETYMKQ KGLTSLISEP QASSVTQPLP QDTPTVQADA QCNEEERQGL DENQNSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	B3 family protein