PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024981190.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Protein Properties

Length: 724aa MW: 80481.3 Da PI: 7.1883

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024981190.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.9	9e-19	318	417	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +Lk+gD+v+F++++ e++ XP_024981190.1 318 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWLFQFRFwpNNNSRMYVLE-GVTPCIQSMQLKAGDTVTFSRME-PEGK 410 99************************555567778***********99899999999.*******************876.7888 PP .EEEEE- CS B3 92 lvvkvfr 98 l++++++ XP_024981190.1 411 LLMGFRK 417 8888776 PP

Sequence ? help Back to Top
Protein Sequence Length: 724 aa Download sequence
MESRICMNEL CGASLAAAGD YKKGWALRSG DFAKLCNKCG IAYEKLAFCE LFHLVDTGWR 60 ECTSCGKRLH CGCIASSAFI ELLEDGGVSC ASCSNSLRRE PSTSEDKPEE CGVSVENSVG 120 EMRSSSIKML KQCGDGTGDD GQKYFLPSDN DDASTSQMKQ EESLPPKGEM QTMSPSISTF 180 NGTSESAHGT KVIKYKESTG VKDAYGSLVQ TDLTIGLASS RNPVFLPSMA VEERELNKSY 240 SSFQHGPWSR HVLPKVPKSI LAQGYDGNAS MNSQIRVARP PVEGRIKNQL LPRYWPRITE 300 QELQQISGDS NATVVPLFEK VLSASDAGRI GRLVLPKACA EAYFPPISQP EGLPLRIQDV 360 KGKEWLFQFR FWPNNNSRMY VLEGVTPCIQ SMQLKAGDTV TFSRMEPEGK LLMGFRKAPI 420 SASMQDMLSP PTALKPSTIT IEDHEFEEYE EPPVFGKVSI FTARLSGEQE QWAQCNNCSK 480 WRRLPVNFLL PAKWTCQENV WDQSRSVCLA PDELSPRELE YLLGLAKEFQ RLRRPDQAQG 540 VTGHNLTEPS IAATTKHPRH RPGCSCIVCS QPPSGKGKHK PNCTCNVCMT VKRRFKTLML 600 RKQQRQSERE AEIAEKNQLK LETEMETGFA ELRSSGKGQL DLNIHPRRLQ DNHAKNHVSM 660 MSLLQAANQP LETYMKQKGL TSLISEPQAS SVTQPLPQDT PTVQADAQCN EEERQGLDEN 720 QNSS

Sequence ? help Back to Top

Protein Sequence Length: 724 aa Download sequence

MESRICMNEL CGASLAAAGD YKKGWALRSG DFAKLCNKCG IAYEKLAFCE LFHLVDTGWR  60
ECTSCGKRLH CGCIASSAFI ELLEDGGVSC ASCSNSLRRE PSTSEDKPEE CGVSVENSVG  120
EMRSSSIKML KQCGDGTGDD GQKYFLPSDN DDASTSQMKQ EESLPPKGEM QTMSPSISTF  180
NGTSESAHGT KVIKYKESTG VKDAYGSLVQ TDLTIGLASS RNPVFLPSMA VEERELNKSY  240
SSFQHGPWSR HVLPKVPKSI LAQGYDGNAS MNSQIRVARP PVEGRIKNQL LPRYWPRITE  300
QELQQISGDS NATVVPLFEK VLSASDAGRI GRLVLPKACA EAYFPPISQP EGLPLRIQDV  360
KGKEWLFQFR FWPNNNSRMY VLEGVTPCIQ SMQLKAGDTV TFSRMEPEGK LLMGFRKAPI  420
SASMQDMLSP PTALKPSTIT IEDHEFEEYE EPPVFGKVSI FTARLSGEQE QWAQCNNCSK  480
WRRLPVNFLL PAKWTCQENV WDQSRSVCLA PDELSPRELE YLLGLAKEFQ RLRRPDQAQG  540
VTGHNLTEPS IAATTKHPRH RPGCSCIVCS QPPSGKGKHK PNCTCNVCMT VKRRFKTLML  600
RKQQRQSERE AEIAEKNQLK LETEMETGFA ELRSSGKGQL DLNIHPRRLQ DNHAKNHVSM  660
MSLLQAANQP LETYMKQKGL TSLISEPQAS SVTQPLPQDT PTVQADAQCN EEERQGLDEN  720
QNSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	1e-135	B3 family protein