PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024981188.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Protein Properties

Length: 838aa MW: 92989.1 Da PI: 7.3904

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024981188.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.6	1.1e-18	318	417	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +Lk+gD+v+F++++ e++ XP_024981188.1 318 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWLFQFRFwpNNNSRMYVLE-GVTPCIQSMQLKAGDTVTFSRME-PEGK 410 99************************555567778***********99899999999.*******************876.7888 PP .EEEEE- CS B3 92 lvvkvfr 98 l++++++ XP_024981188.1 411 LLMGFRK 417 8888776 PP

Sequence ? help Back to Top
Protein Sequence Length: 838 aa Download sequence
MESRICMNEL CGASLAAAGD YKKGWALRSG DFAKLCNKCG IAYEKLAFCE LFHLVDTGWR 60 ECTSCGKRLH CGCIASSAFI ELLEDGGVSC ASCSNSLRRE PSTSEDKPEE CGVSVENSVG 120 EMRSSSIKML KQCGDGTGDD GQKYFLPSDN DDASTSQMKQ EESLPPKGEM QTMSPSISTF 180 NGTSESAHGT KVIKYKESTG VKDAYGSLVQ TDLTIGLASS RNPVFLPSMA VEERELNKSY 240 SSFQHGPWSR HVLPKVPKSI LAQGYDGNAS MNSQIRVARP PVEGRIKNQL LPRYWPRITE 300 QELQQISGDS NATVVPLFEK VLSASDAGRI GRLVLPKACA EAYFPPISQP EGLPLRIQDV 360 KGKEWLFQFR FWPNNNSRMY VLEGVTPCIQ SMQLKAGDTV TFSRMEPEGK LLMGFRKAPI 420 SASMQDSRIA AIHSGVFPSE PSLSGVNTIG NLSHMSDYSG LLQSLKRNTD SHLNALSTNT 480 NSPIGDASRH ANEKLGSKSS VDSFQPDKKR SRNINSKSKR LLIESQDALE LKYTWEELQD 540 MLSPPTALKP STITIEDHEF EEYEEPPVFG KVSIFTARLS GEQEQWAQCN NCSKWRRLPV 600 NFLLPAKWTC QENVWDQSRS VCLAPDELSP RELEYLLGLA KEFQRLRRPD QAQGVTGHNL 660 TEPSIAATTK HPRHRPGCSC IVCSQPPSGK GKHKPNCTCN VCMTVKRRFK TLMLRKQQRQ 720 SEREAEIAEK NQLKLETEME TGFAELRSSG KGQLDLNIHP RRLQDNHAKN HVSMMSLLQA 780 ANQPLETYMK QKGLTSLISE PQASSVTQPL PQDTPTVQAD AQCNEEERQG LDENQNSS

Sequence ? help Back to Top

Protein Sequence Length: 838 aa Download sequence

MESRICMNEL CGASLAAAGD YKKGWALRSG DFAKLCNKCG IAYEKLAFCE LFHLVDTGWR  60
ECTSCGKRLH CGCIASSAFI ELLEDGGVSC ASCSNSLRRE PSTSEDKPEE CGVSVENSVG  120
EMRSSSIKML KQCGDGTGDD GQKYFLPSDN DDASTSQMKQ EESLPPKGEM QTMSPSISTF  180
NGTSESAHGT KVIKYKESTG VKDAYGSLVQ TDLTIGLASS RNPVFLPSMA VEERELNKSY  240
SSFQHGPWSR HVLPKVPKSI LAQGYDGNAS MNSQIRVARP PVEGRIKNQL LPRYWPRITE  300
QELQQISGDS NATVVPLFEK VLSASDAGRI GRLVLPKACA EAYFPPISQP EGLPLRIQDV  360
KGKEWLFQFR FWPNNNSRMY VLEGVTPCIQ SMQLKAGDTV TFSRMEPEGK LLMGFRKAPI  420
SASMQDSRIA AIHSGVFPSE PSLSGVNTIG NLSHMSDYSG LLQSLKRNTD SHLNALSTNT  480
NSPIGDASRH ANEKLGSKSS VDSFQPDKKR SRNINSKSKR LLIESQDALE LKYTWEELQD  540
MLSPPTALKP STITIEDHEF EEYEEPPVFG KVSIFTARLS GEQEQWAQCN NCSKWRRLPV  600
NFLLPAKWTC QENVWDQSRS VCLAPDELSP RELEYLLGLA KEFQRLRRPD QAQGVTGHNL  660
TEPSIAATTK HPRHRPGCSC IVCSQPPSGK GKHKPNCTCN VCMTVKRRFK TLMLRKQQRQ  720
SEREAEIAEK NQLKLETEME TGFAELRSSG KGQLDLNIHP RRLQDNHAKN HVSMMSLLQA  780
ANQPLETYMK QKGLTSLISE PQASSVTQPL PQDTPTVQAD AQCNEEERQG LDENQNSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	B3 family protein