PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024981170.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Protein Properties

Length: 859aa MW: 93771.4 Da PI: 7.662

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024981170.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.4	6.4e-19	333	432	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpk +ae++ +++ e+ ++++d +g++W++++++ +++s++yvl+ G + +L++gD+v+F++ + +++ XP_024981170.1 333 FEKVLSASDAGRIGRLVLPKACAEAYfpAINQSEGLPIRIQDIKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDTVIFSRLD-PGEK 425 99************************677777888***********99899999999.*******************654.5666 PP .EEEEE- CS B3 92 lvvkvfr 98 lv++ ++ XP_024981170.1 426 LVIGCRK 432 6666654 PP

Sequence ? help Back to Top
Protein Sequence Length: 859 aa Download sequence
MSSSKICMNG LCGAKMTPQW KRGWPMKAGG FATLCYSCGT AYEHVNYCER FHLNEPGWRE 60 CKFCDKPVHC GCVVSKYLHE CLDLGGISCI KCIRARGTQA LKPIQSYPSD IPNGFVPFSG 120 TWHPSIIGKR MNGGASVDKG KLTQLSEAIE KHQPSPSSSS IGHQIRQDEN RLPSGELGMG 180 FSSSKDVGTI FPSSSSLFAT PDNGRPDSGL KALYEAMPQP SLSYSLANAL ATTKSSVLSN 240 PSGVVDGREP EKVPSFKQGQ RSRLTFPKPS KSGVSIRSQS NKGMVSDNRV ARPPAEGRGR 300 NQLLPRYWPK ITDQELLQIS GDLNSNCTIT PLFEKVLSAS DAGRIGRLVL PKACAEAYFP 360 AINQSEGLPI RIQDIKGKEW TFQFRFWPNN NSRMYVLEGV TPCIQNMQLQ AGDTVIFSRL 420 DPGEKLVIGC RKAAVSADTQ EAETPAVNGV TGGTSSGTGN PSTKNSEHEG MRNGDSVQRP 480 VIQEKKKTRN IGSKNKRLLM HNEDAMELKV TWEEAHELLR PSPTSKPTVS MIENCEFEEY 540 DEPPVFGKKT IFTEHASGSQ EQWGQCDSCS RWRRLPPDVL LPPKWTCSDN IWDPDRCSCS 600 APDEISTRDL ERIFKVGKDL KKRKLAEGRV VEEPSGLDAL ATAAVLGESI GEFGESSAGP 660 TTRHPRHRPG CTCIVCIQPP SGKGKHKPNC FCNVCLTVKR RFKTLMLRKK KRMSDREAEV 720 VQKPLVALNN GMMSPGGRII DQNGMEVEVG ESSSSKGGGQ LDLNCDPDKE EEMMAVDDGS 780 GIIPLEWKNV LAGLVPCAMP KRTNEIEGRP PVEGDLNPSS SETIPTHPPT DETASPMDDD 840 DAAAAAAAKV EMEKAVEDG

Sequence ? help Back to Top

Protein Sequence Length: 859 aa Download sequence

MSSSKICMNG LCGAKMTPQW KRGWPMKAGG FATLCYSCGT AYEHVNYCER FHLNEPGWRE  60
CKFCDKPVHC GCVVSKYLHE CLDLGGISCI KCIRARGTQA LKPIQSYPSD IPNGFVPFSG  120
TWHPSIIGKR MNGGASVDKG KLTQLSEAIE KHQPSPSSSS IGHQIRQDEN RLPSGELGMG  180
FSSSKDVGTI FPSSSSLFAT PDNGRPDSGL KALYEAMPQP SLSYSLANAL ATTKSSVLSN  240
PSGVVDGREP EKVPSFKQGQ RSRLTFPKPS KSGVSIRSQS NKGMVSDNRV ARPPAEGRGR  300
NQLLPRYWPK ITDQELLQIS GDLNSNCTIT PLFEKVLSAS DAGRIGRLVL PKACAEAYFP  360
AINQSEGLPI RIQDIKGKEW TFQFRFWPNN NSRMYVLEGV TPCIQNMQLQ AGDTVIFSRL  420
DPGEKLVIGC RKAAVSADTQ EAETPAVNGV TGGTSSGTGN PSTKNSEHEG MRNGDSVQRP  480
VIQEKKKTRN IGSKNKRLLM HNEDAMELKV TWEEAHELLR PSPTSKPTVS MIENCEFEEY  540
DEPPVFGKKT IFTEHASGSQ EQWGQCDSCS RWRRLPPDVL LPPKWTCSDN IWDPDRCSCS  600
APDEISTRDL ERIFKVGKDL KKRKLAEGRV VEEPSGLDAL ATAAVLGESI GEFGESSAGP  660
TTRHPRHRPG CTCIVCIQPP SGKGKHKPNC FCNVCLTVKR RFKTLMLRKK KRMSDREAEV  720
VQKPLVALNN GMMSPGGRII DQNGMEVEVG ESSSSKGGGQ LDLNCDPDKE EEMMAVDDGS  780
GIIPLEWKNV LAGLVPCAMP KRTNEIEGRP PVEGDLNPSS SETIPTHPPT DETASPMDDD  840
DAAAAAAAKV EMEKAVEDG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	618	624	KDLKKRK
2	699	710	KRRFKTLMLRKK
3	699	712	KRRFKTLMLRKKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	B3 family protein